1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gtcctgaatttatctatagagtttttttgttctgaaaatgaacacttcactttcaattgattgtttatgccattatctattcatttttttttcacaacagGCTGCTCCTGAAGGTTCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCAACTGGAATAGACCCAACTCCTGAACAGTGGGAGAAAATTGCAGATGTCA
species | Zea mays |
transcript | GRMZM5G836910_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGATATTGAG GCTGCTCCTGAAGGATCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCAEST: gi|26557436|gb|CA829671.1|CA829671
genomic: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGACATTGAGgtacttggat ... ttcacaacagGCTGCTCCTGAAGGTTCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCA
EST: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGACATTGAG GCTGCTCCTGAAGGTTCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCAEST: gi|32863795|gb|CF003477.1|CF003477
genomic: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGACATTGAGgtacttggat ... ttcacaacagGCTGCTCCTGAAGGTTCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCA
EST: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGATATTGAG GCTGCTCCTGAAGGATCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCAEST: gi|32802835|gb|CD955071.1|CD955071
genomic: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGACATTGAGgtacttggat ... ttcacaacagGCTGCTCCTGAAGGTTCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCA
EST: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGATATTGAG GCTGCTCCTGAEST: gi|5342983|gb|AI795288.1|AI795288
genomic: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGACATTGAGgtacttggat ... ttcacaacagGCTGCTCCTGA
EST: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGATATTGAG GCTGCTCCTGAAGGATCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCAEST: gi|32844188|gb|CD983869.1|CD983869
genomic: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGACATTGAGgtacttggat ... ttcacaacagGCTGCTCCTGAAGGTTCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCA
EST: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGATATTGAG GCTGCTCCTGAAGGATCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCAEST: gi|32921476|gb|CF026288.1|CF026288
genomic: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGACATTGAGgtacttggat ... ttcacaacagGCTGCTCCTGAAGGTTCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCA
EST: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGACATTGAG GCTGCTCCTGAAGGTTCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCAEST: gi|13515691|gb|BG517967.1|BG517967
genomic: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGACATTGAGgtacttggat ... ttcacaacagGCTGCTCCTGAAGGTTCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCA
EST: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGACATTGAG GCTGCTCCTGAAGGNTCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCAEST: gi|32926958|gb|CF031770.1|CF031770
genomic: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGACATTGAGgtacttggat ... ttcacaacagGCTGCTCCTGAAGGTTCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCA
EST: ATTTTGAGGGAATGATAGCTGATATTGAG GCTGCTCCTGAAGGATCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCAEST: gi|32920753|gb|CF025565.1|CF025565
genomic: ATTTTGAGGGAATGATAGCTGACATTGAGgtacttggat ... ttcacaacagGCTGCTCCTGAAGGTTCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCA
EST: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGACATTGAG GCTGCTCCTGAAGGTTCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCAEST: gi|149107658|gb|EE189537.2|EE189537
genomic: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGACATTGAGgtacttggat ... ttcacaacagGCTGCTCCTGAAGGTTCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCA
EST: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGGATGATAGCTGACATTGAG GCTGCTCCCTGA-GGTTCCTTTGEST: gi|32925729|gb|CF030541.1|CF030541
genomic: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGACATTGAGgtacttggat ... ttcacaacagGCTGCTCC-TGAAGGTTCTTTTG
EST: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGATATTGAG GCTGCTCCTGAAGGATCTTTTGTTCTGCTACACGGTTGTGCTCACAACCCAEST: gi|32921723|gb|CF026535.1|CF026535
genomic: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGACATTGAGgtacttggat ... ttcacaacagGCTGCTCCTGAAGGTTCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCA
EST: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGACATTGAG GCTGCTCCTGAAGGTTCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCAEST: gi|13150003|gb|BG320325.1|BG320325
genomic: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGACATTGAGgtacttggat ... ttcacaacagGCTGCTCCTGAAGGTTCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCA
EST: ACCCCAAGACTGTT-GGKTGGATTTTGAGGGAATGATAGCTGACATTGAG GCTGCTCCTGAAGGTTCTTTTGTTCTGCTACATGG-TGTGCTCACAACCCAEST: gi|32843163|gb|CD982844.1|CD982844
genomic: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGACATTGAGgtacttggat ... ttcacaacagGCTGCTCCTGAAGGTTCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCA
EST: CAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGATATTGAG GCTGCTCCTGAAGGATCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCAEST: gi|32921739|gb|CF026551.1|CF026551
genomic: CAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGACATTGAGgtacttggat ... ttcacaacagGCTGCTCCTGAAGGTTCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCA
EST: ACCCCAAGACTGTTGGGTTGGATTTTGGGGGAATGATAGCTGACATTGAG GCTGCTCCTGAAGGTTCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCAEST: gi|32788347|gb|CD940583.1|CD940583
genomic: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGACATTGAGgtacttggat ... ttcacaacagGCTGCTCCTGAAGGTTCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCA
EST: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGATATTGAG GCTGCTCCTGAAGGEST: gi|32925063|gb|CF029875.1|CF029875
genomic: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGACATTGAGgtacttggat ... ttcacaacagGCTGCTCCTGAAGG
EST: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGATATTGAG GCTGCTCCTGAAGGATCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCAEST: gi|32925965|gb|CF030777.1|CF030777
genomic: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGACATTGAGgtacttggat ... ttcacaacagGCTGCTCCTGAAGGTTCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCA
EST: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGATATTGAG GCTGCTCCTGAAGGATCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCAEST: gi|78114229|gb|DV532618.1|DV532618
genomic: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGACATTGAGgtacttggat ... ttcacaacagGCTGCTCCTGAAGGTTCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCA
EST: ACCCCTAGACTGTTGGGTTGGATTTTGAGGGGATGATAGCTGACATTGAG GCTGCTCCTGAAGGTTCTTTTTGT-CTGCTACATGGTEST: gi|149000841|gb|EE038069.2|EE038069
genomic: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGACATTGAGgtacttggat ... ttcacaacagGCTGCTCCTGAAGGTTCTTTT-GTTCTGCTACATGGT
EST: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGACATTGAG GCTGCTCCTGAAGGTTCTTTTGTTCTGCTACATGGTTGTGCTCACACCCCAEST: gi|32925664|gb|CF030476.1|CF030476
genomic: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGACATTGAGgtacttggat ... ttcacaacagGCTGCTCCTGAAGGTTCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCA
EST: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGATATTGAG GCTGCTCCTGAAGGATCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCAEST: gi|91056033|gb|EB166451.1|EB166451
genomic: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGACATTGAGgtacttggat ... ttcacaacagGCTGCTCCTGAAGGTTCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCA
EST: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGACATTGAG GCTGCTCCTGAAGGTTCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCAEST: gi|26557367|gb|CA829602.1|CA829602
genomic: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGACATTGAGgtacttggat ... ttcacaacagGCTGCTCCTGAAGGTTCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCA
EST: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGACATTGAG GCTGCTCCTGAAGGTTCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCA
genomic: ACCCCAAGACTGTTGGGTTGGATTTTGAGGGAATGATAGCTGACATTGAGgtacttggat ... ttcacaacagGCTGCTCCTGAAGGTTCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCA
ttcactttcaattgattgtttatgccattatctattcatttttttttcacaacagGCTGCTCCTGAAGGTTCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCAACTGGAATAGACCCAACTCCTGAACAGTGGGAGAAAATTGCAGATGTCA
aattgat putative branch site (score: 308)
ttatctattcattttt putative PPT
attatctattcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcctgaatttatctatagagtttttttgttctgaaaatgaacacttcactttcaattgattgtttatgccattatctattcatttttttttcacaacagGCTGCTCCTGAAGGTTCTTTTGTTCTGCTACATGGTTGTGCTCACAACCCAACTGGAATAGACCCAACTCCTGAACAGTGGGAGAAAATTGCAGATGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- cctgaat
- - - - - - - - - - - - - -tgttctg
- - - - - - - - - - - - - - - - - - - - - cacttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgccatt