1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtacgtttcgtcgtctgtgactgactcctgtccatagcacttgctcaagaactccccgcctcttcttttgtttttgaaacgattaaacgaagctccagctgtagcttacaccataataaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTTGAGATACATTGGAAG
species | Zea mays |
transcript | GRMZM5G836250_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA GTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTTEST: gi|89759142|gb|DY688055.1|DY688055
genomic: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
EST: ATTCAGTCCACGAAGGGGACGCCAAGAACTGGGACGCGCCTGTTGCCCAA GTT-GTGGAAAAGTGCAAGTAEST: gi|149088446|gb|EE177549.2|EE177549
genomic: ATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCC-AAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTA
EST: ATTCAGTNCA-CGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA GTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTTEST: gi|149095912|gb|EE181574.2|EE181574
genomic: ATTCAGT-CAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
EST: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA GTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCNAGATCTTTEST: gi|32838746|gb|CD978427.1|CD978427
genomic: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
EST: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA GTTCGTGGAGAAGTGCAAGTEST: gi|148932776|gb|EE285437.2|EE285437
genomic: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGT
EST: ATTCAGTCAACGAANGGGA-CGCCAAGAACTGGGACGCGCCTGTTGCCAA GTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTTEST: gi|78106829|gb|DV525247.1|DV525247
genomic: ATTCAGTCAACGAA-GGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
EST: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA GTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTTEST: gi|32920564|gb|CF025376.1|CF025376
genomic: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTT
EST: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA GTTCGTGGAGAAGTGCAAGTEST: gi|74244032|gb|DT651946.1|DT651946
genomic: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGT
EST: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAA GTTTGTGGAGAAAGTGCA-GTACCCCAAAGATGGCTCGCCACCAAGATCTTEST: gi|71757120|gb|DR955057.1|DR955057
genomic: TATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGCCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAA-GTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTT
EST: ATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTGTCCAA GTT-GTGGAGAAGTGCAAGTACCCCAAAGATG
genomic: ATTCAGTCAACGAAGGGAACGCCAAGAACTGGGACGCGCCTGTTG-CCAAgtacgtttcg ... taaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATG
ttttgaaacgattaaacgaagctccagctgtagcttacaccataataaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTTGAGATACATTGGAAG
agcttac putative branch site (score: 92)
ataataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtttcgtcgtctgtgactgactcctgtccatagcacttgctcaagaactccccgcctcttcttttgtttttgaaacgattaaacgaagctccagctgtagcttacaccataataaaccacagGTTTGTGGAGAAGTGCAAGTACCCCAAAGATGGCTCGCCACCAAGATCTTTGAGATACATTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG