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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtgtcgccattatttaaaccctttgtgcattgttgccatgaacttttggagctgctgtttcatctcgttatgtcattattccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG

Basic information

species Zea mays
transcript GRMZM5G835213_T02
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31361403|gb|CD445760.1|CD445760
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|71328163|gb|DR800724.1|DR800724
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|24934275|gb|CA452493.1|CA452493
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|76916928|gb|DV166611.1|DV166611
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|71449843|gb|DR830893.1|DR830893
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|50328157|gb|CO523283.1|CO523283
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|149005281|gb|EE039830.2|EE039830
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|71436375|gb|DR817425.1|DR817425
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|26456718|gb|CA828301.1|CA828301
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|71764597|gb|DR962534.1|DR962534
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|148944552|gb|EC889676.2|EC889676
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|149096874|gb|EE182668.2|EE182668
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|22546594|gb|BU098905.1|BU098905
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|71428352|gb|DR809402.1|DR809402
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|148965511|gb|EE016330.2|EE016330
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|93013850|gb|EB639370.1|EB639370
EST:     AACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACC-AGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|71760191|gb|DR958128.1|DR958128
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|93012834|gb|EB638354.1|EB638354
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|149098619|gb|EE184624.2|EE184624
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|22545671|gb|BU098030.1|BU098030
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|148938880|gb|EC883234.2|EC883234
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|94475248|gb|EB704206.1|EB704206
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|71324258|gb|DR798829.1|DR798829
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|149111090|gb|EE294586.2|EE294586
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|148972836|gb|EE023824.2|EE023824
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|29544652|gb|CB605032.1|CB605032
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|148961382|gb|EE012120.2|EE012120
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|211492468|gb|FL234470.1|FL234470
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|211492467|gb|FL234469.1|FL234469
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|149103764|gb|EE289171.2|EE289171
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|149104833|gb|EE290297.2|EE290297
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|149095084|gb|EE180690.2|EE180690
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|71431558|gb|DR812608.1|DR812608
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|149073417|gb|EE161721.2|EE161721
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|71317247|gb|DR795307.1|DR795307
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|194717059|gb|FK934212.1|FK934212
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|71773943|gb|DR971831.1|DR971831
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|5268356|gb|AI770320.1|AI770320
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|149079527|gb|EE168509.2|EE168509
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|71756632|gb|DR954569.1|DR954569
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|149104834|gb|EE290298.2|EE290298
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|149004891|gb|EE039402.2|EE039402
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|149084914|gb|EE174423.2|EE174423
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|26456698|gb|CA828281.1|CA828281
EST:     AACAGGACGATCCAGAGGGTTTGGTCTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AACAGGACGATCCAGAGGGTTTGGT-TTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|32850339|gb|CD990020.1|CD990020
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|32866442|gb|CF006124.1|CF006124
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
EST: gi|71431559|gb|DR812609.1|DR812609
EST:     AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAG                         GATGCTCAAAGTGCGATAAATGACTTGAATG
genomic: AAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgc ... tccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccatgaacttttggagctgctgtttcatctcgttatgtcattattccttaacagGATGCTCAAAGTGCGATAAATGACTTGAATG
                                         ttattcctt  CT-rich tract
                                      tcattatt  TA-rich tract