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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgggtccggttttattactgttgctttggatggtgttggaatatctgtgcacatctatcacctttttgttacttgtcgctgtctgctacagtcacactgatgttttgtgccgcccctattatttgctagGGATGAAACACTGGTATCACAAGCTATAGAGCTAAATGAAGAGCTACATAAGGTTCTCGTCCGGCATGACGCGTTGCTTTCAGTTCATCCGACAACAGCA

Basic information

species Zea mays
transcript GRMZM5G834205_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G834205_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os08g01740.2 (Oryza sativa), 3'ss of exon 8
gtacgggtccggttttattactgttgctttggatggtgttggaatatctgtgcacatctatcac-ctttttgttacttgtc-gctgtctgctacagtcacactgatgttttgtgccgcccctattatttgctagGGATGAAACACTGGTATCACAAGCTATAGAGCTAAATGAAGAGCTACATAAGGTTCTCGTCCGGCATGACGCGTTGCTTTCAGTTCATCCGACAACAGCA
             |   |  |   || ||  | || | ||  ||||||| |  ||||   ||   |  |  || |  |||       | ||||   | ||| |||  | | | |  ||     ||  ||||||||||||||    ||||||||||||| ||||| || || |||||||| || ||||| || || |||||||| ||||||||||||||||| || || ||| ||
------------gtaagtgtccactgttt--ggtgctcttc-aatatcttttgacattgctccttcagtccgtgatatgtttataagcagctatttttacattgacatat-gagttgctatcctttgttgctagGGATGAAGTGGTGGTATCACAAGCAATAGAACTGAACGAAGAGCTTCACAAGGTCCTTGTACGGCATGATGCGTTGCTTTCAGTTCAGCCAACTACAACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71421501|gb|DR805467.1|DR805467
EST:     CAATGTACGTTTCAGAAGCAACGAATAATGCACCTTGTTATGACATCAAG                         GGATGAAACACTGGTATCACAAGCTATAGAGCTAAATGAAGAGCTACATAA
genomic: CAATGTACGTTTCAGAAGCAACGAATAATGCACCTTGTTATGACATCAAGgtacgggtcc ... tatttgctagGGATGAAACACTGGTATCACAAGCTATAGAGCTAAATGAAGAGCTACATAA
EST: gi|149059924|gb|EE157051.2|EE157051
EST:     CAATGTACGTTTCAGAAGCAACGAATAATGCACCTTGTTATGACATCAAG                         GGATGAAACACTGGTATCACAAGCTATAGAGCTAAATGAAGAGCTACATAA
genomic: CAATGTACGTTTCAGAAGCAACGAATAATGCACCTTGTTATGACATCAAGgtacgggtcc ... tatttgctagGGATGAAACACTGGTATCACAAGCTATAGAGCTAAATGAAGAGCTACATAA
EST: gi|149088092|gb|EE287276.2|EE287276
EST:     CAATGTACGTTTCAGAAGCAACGAATAATGCACCTTGTTATGACATCAAG                         GGATGAAACACTGGTATCACAAGCTATAGAGCTAAATGAAGAGCTACATAA
genomic: CAATGTACGTTTCAGAAGCAACGAATAATGCACCTTGTTATGACATCAAGgtacgggtcc ... tatttgctagGGATGAAACACTGGTATCACAAGCTATAGAGCTAAATGAAGAGCTACATAA
EST: gi|78107222|gb|DV525640.1|DV525640
EST:     CAATGTACGTTTCAGAAGCAACGAATAATGCACCTTGTTATGACATCAAG                         GGATGAAACACTGGTATCACAAGCTATAGAGCTAAATGAAGAGCTACATAA
genomic: CAATGTACGTTTCAGAAGCAACGAATAATGCACCTTGTTATGACATCAAGgtacgggtcc ... tatttgctagGGATGAAACACTGGTATCACAAGCTATAGAGCTAAATGAAGAGCTACATAA
EST: gi|50325446|gb|CO520572.1|CO520572
EST:     CAATGTACGTTTCAGAAGCAACGAATAATGCACCTTGTTATGACATCAAG                         GGATGAAACACTGGTATCACAAGCTATAGAGCTAAATGAAGAGCTACATAA
genomic: CAATGTACGTTTCAGAAGCAACGAATAATGCACCTTGTTATGACATCAAGgtacgggtcc ... tatttgctagGGATGAAACACTGGTATCACAAGCTATAGAGCTAAATGAAGAGCTACATAA
EST: gi|74245587|gb|DT653501.1|DT653501
EST:     CAATGTACGTTTCAGAAGCAACGAATAATGCACCTTGTTATGACATCAAG                         GGATGAAACACTGGTATCACAAGCTATAGAGCTAAATGAAGAGCTACATAA
genomic: CAATGTACGTTTCAGAAGCAACGAATAATGCACCTTGTTATGACATCAAGgtacgggtcc ... tatttgctagGGATGAAACACTGGTATCACAAGCTATAGAGCTAAATGAAGAGCTACATAA
EST: gi|149105965|gb|EE291598.2|EE291598
EST:     CAATGTACGTTTCAGAAGCAACGAATAATGCACCTTGTTATGACATCAAG                         GGATGAAACACTGGTATCACAAGCTATAGAGCTAAATGAAGAGCTACATAA
genomic: CAATGTACGTTTCAGAAGCAACGAATAATGCACCTTGTTATGACATCAAGgtacgggtcc ... tatttgctagGGATGAAACACTGGTATCACAAGCTATAGAGCTAAATGAAGAGCTACATAA
EST: gi|71428013|gb|DR809063.1|DR809063
EST:     CAATGTACGTTTCAGAAGCAACGAATAATGCACCTTGTTATGACATCAAG                         GGATGAAACACTGGTATCACAAGCTATAGAGCTAAATGAAGAGCTACATAA
genomic: CAATGTACGTTTCAGAAGCAACGAATAATGCACCTTGTTATGACATCAAGgtacgggtcc ... tatttgctagGGATGAAACACTGGTATCACAAGCTATAGAGCTAAATGAAGAGCTACATAA
EST: gi|211276223|gb|FL230638.1|FL230638
EST:     CAATGTACGTTTCAGAAGCAACGAATAATGCACCTTGTTATGACATCAAG                         GGATGAAACACTGGTATCACAAGCTATAGAGCTAAATGAAGAGCTACATAA
genomic: CAATGTACGTTTCAGAAGCAACGAATAATGCACCTTGTTATGACATCAAGgtacgggtcc ... tatttgctagGGATGAAACACTGGTATCACAAGCTATAGAGCTAAATGAAGAGCTACATAA
EST: gi|71326004|gb|DR799684.1|DR799684
EST:     CAATGTACGTTTCAGAAGCAACGAATAATGCACCTTGTTATGACATCAAG                         GGATGAAACACTGGTATCACAAGCTATAGAGCTAAATGAAGAGCTACATAA
genomic: CAATGTACGTTTCAGAAGCAACGAATAATGCACCTTGTTATGACATCAAGgtacgggtcc ... tatttgctagGGATGAAACACTGGTATCACAAGCTATAGAGCTAAATGAAGAGCTACATAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcgctgtctgctacagtcacactgatgttttgtgccgcccctattatttgctagGGATGAAACACTGGTATCACAAGCTATAGAGCTAAATGAAGAGCTACATAAGGTTCTCGTCCGGCATGACGCGTTGCTTTCAGTTCATCCGACAACAGCA
                    cactgat  putative branch site (score: 3)
                                      cccctatt  putative PPT
                                          tattattt  TA-rich tract