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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaataatttgaagtttctattagagcactctttcggtttccctgttgcttagcctagcgttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG

Basic information

species Zea mays
transcript GRMZM5G833389_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G833389_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g60190.1 (Oryza sativa), 3'ss of exon 7
----gtaaataatttgaagtttctattagagcactctttcggtttccc-tgttgcttag----cctagcgttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG
    |||| |  || |  | | ||   |   |  | |  |  | |    |||||||||       ||    | ||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||
gtaggtaattgtttcgtcggtgctcagatgactgtttgcctatataaaatgttgcttaaaatttttattactcttttagGTACGTGTCAACCTGCCGAATGGTGACATGGTTGGTCACACTGGTGATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAG

upper sequence: GRMZM5G833389_T02 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA09G40690.1 (Glycine max), 3'ss of exon 6
------------------gtaaataatttgaagtttctattagagcactctttcggtttccctgttgcttagcctagcgttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG
                  || | |  || | | |    ||   |  |  ||||   || | || ||  || | ||   ||||| | ||||||| |||||||| ||||||||||||||||| || || || ||||| ||||| || || || || |||||||||||||||||||  ||||| |||
gtaactaaatggttcaccgtgatt--ttgggaatcgtgatctaattaaacttttatttactctcttattttgtct---gttgt-atagGTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATTGAAGCAACAGTTGTGGCTTGCAAGGCAGCTGATGCTGCTGTGAAG

upper sequence: GRMZM5G833389_T02 (Zea mays), 3'ss of exon 7
lower sequence: AT3G08590.2 (Arabidopsis thaliana), 3'ss of exon 5
-----gtaaataatttga--agtttctattagagcactctttcggtttccctgtt-gcttagc-ctagcgttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG
     ||  ||  | | |  |  || ||| |   || |    |  ||  | | |  | || |  | |  |   || ||||| ||||| |||||||||||||| || ||||| || || |||||||||||||| || || || ||||| ||  | || ||||||   ||||| | |
gtaaggtgtattctcttatcacattgtatcaacccattaaaacaattggcttctgagtttggtgccaatggattttcagGTGCGTGTAAACCTGCCAAATGGAGATATGGTGGGGCATACTGGTGATATTGAAGCAACTGTTGTTGCCTGTGAAGCTGCTGATCGTGCTGTGAGG

upper sequence: GRMZM5G833389_T02 (Zea mays), 3'ss of exon 7
lower sequence: AT1G09780.1 (Arabidopsis thaliana), 3'ss of exon 4
---------gtaaataatttgaagtttctattagagcac-tctttcggtttccctgttgcttagccta-------gcgttg--ttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG
          |  ||| | | | | |  ||| |  | || ||    |   |      || | | | ||          |||  || ||||| || || ||| | |||||||| || ||||| ||||| || ||||||||||| ||||| || ||||| ||| |||| ||||||   ||||| |||
gtgagatggatgcatagtcttatgatcttataatcgaacatcccaggaaataagcagtgatcatcttatgtttcaatattgattttcagGTGCGAGTTAACATTCCAAATGGAGATATGGTGGGTCATACAGGTGATATTGAAGCCACGGTTGTTGCATGCGAGGCTGCTGATCTTGCTGTGAAG

upper sequence: GRMZM5G833389_T02 (Zea mays), 3'ss of exon 7
lower sequence: Vv08s0056g00200.t01 (Vitis vinifera), 3'ss of exon 6
---------gtaaataatttgaagtttctattagagcactctttcggtttccctg----ttgcttagcctagcgttgttac--agGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG
         | |  |    |   || | |   | | ||   ||   | |   |      ||| || |  |  | |  ||    |||| ||||| ||||| ||||||||||||||||| || |||||||||||||||||||| ||  | || ||||||||||| |||||||||||||| |||
gtaattagtggacttggcatagggtatttgagacaacatggttcaagctgaacaaatatttgatttgtttcacatctttgtttagGTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATTGAGGCTACAATTGTAGCTTGCAAGGCTGCTGATGAAGCTGTCAAG

upper sequence: GRMZM5G833389_T02 (Zea mays), 3'ss of exon 7
lower sequence: EFJ14459 (Selaginella moellendorffii), 3'ss of exon 6
gtaaataatttgaagtttctattagagcactctttcggtttccctgttgcttagcctagcgttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG
                     | |   ||   |||   |   ||  |  ||||  ||  || | |   || || | || ||  | || |||||||||||||||||||||||||| ||| |  |||| ||| | || |||||  | || || ||| | |||||||||
--------------------gtaactccaaagtttgcatcgtcccat--cttattctttcgct-tcttagATAAGGGTTAATTTACCCAATGGTGACATGGTTGGTCACACTGGAGATCTCAAGGCGACCATTGTGGCTTGTGAAGCGGCCGATAAGGCTGTTAAG

upper sequence: GRMZM5G833389_T02 (Zea mays), 3'ss of exon 7
lower sequence: EFJ26058 (Selaginella moellendorffii), 3'ss of exon 6
gtaaataatttgaagtttctattagagcactctttcggtttccctgttgcttagcctagcgttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG
                     | |   ||   |||   |    |  | |  ||  ||  | |  |   || || | || ||  | || |||||||||||||||||||||||||| ||| |  |||| ||| | || |||||  | || || ||| | |||||||||
--------------------gtaactccaaagtttgaatcgtgccatcg--tattctttc-tcttcttagATAAGGGTTAATTTACCCAATGGTGACATGGTTGGTCACACTGGAGATCTCAAGGCGACCATTGTGGCTTGTGAAGCGGCCGATAAGGCTGTTAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37401358|gb|CF638042.1|CF638042
EST:     AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
genomic: AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|51592466|gb|CV071612.1|CV071612
EST:     AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
genomic: AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|211244472|gb|FL127869.1|FL127869
EST:     AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCTAAATGGTGACATGGTTGGTCACACTGGTGATATT
genomic: AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|211242245|gb|FL127865.1|FL127865
EST:     AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
genomic: AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|211242243|gb|FL127863.1|FL127863
EST:     AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
genomic: AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|37378208|gb|CF625776.1|CF625776
EST:     AATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTTACCAG                         GTACGTGTCAACCTGCC-AATGGTGACATGGTTGGTCACACTGGTGATATT
genomic: AATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|60356110|gb|DN223083.1|DN223083
EST:     AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
genomic: AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|211240006|gb|FL127846.1|FL127846
EST:     AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
genomic: AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|211242246|gb|FL127866.1|FL127866
EST:     ADATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
genomic: AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|60398692|gb|DN231508.1|DN231508
EST:     AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
genomic: AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|211021747|gb|FL471425.1|FL471425
EST:     AAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
genomic: AAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|67016297|gb|CO445046.1|CO445046
EST:     AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
genomic: AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|78544037|gb|DV621535.1|DV621535
EST:     AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
genomic: AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|211172242|gb|FL456942.1|FL456942
EST:     AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCAC-CTGGTGATATT
genomic: AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|31360915|gb|CD445272.1|CD445272
EST:     AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
genomic: AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|211242239|gb|FL127859.1|FL127859
EST:     AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
genomic: AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|211240009|gb|FL127849.1|FL127849
EST:     AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTWCGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
genomic: AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|211242236|gb|FL127856.1|FL127856
EST:     AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGCTCACACTGGTGATATT
genomic: AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|37392229|gb|CF633363.1|CF633363
EST:     AAAGTTTGACCAG                         GTACGTGTCACCCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATA-T
genomic: AAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|211242247|gb|FL127867.1|FL127867
EST:     AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
genomic: AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|60336942|gb|DN203915.1|DN203915
EST:     AATTTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
genomic: AA-TTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|6637102|gb|AW261374.1|AW261374
EST:     AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
genomic: AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|6626545|gb|AW258077.1|AW258077
EST:     AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
genomic: AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|37375505|gb|CF624191.1|CF624191
EST:     AA-TGCTAGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
genomic: AATTGCT-GAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|211242242|gb|FL127862.1|FL127862
EST:     AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
genomic: AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|67025128|gb|CO453877.1|CO453877
EST:     AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
genomic: AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|211244471|gb|FL127868.1|FL127868
EST:     AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
genomic: AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|67022444|gb|CO451193.1|CO451193
EST:     -TATTGCTGAGAAA-CCA-GGATGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
genomic: AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|40334760|gb|CK368830.1|CK368830
EST:     AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTTACCAG                         GTACGTGTCAACCTGCC-AATGGTGACATGGTTGGTCACACTGGTGATATT
genomic: AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|83278457|gb|DV942465.1|DV942465
EST:     AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
genomic: AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|20513060|gb|BQ280246.1|BQ280246
EST:     AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
genomic: AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|211242238|gb|FL127858.1|FL127858
EST:     AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
genomic: AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|211242244|gb|FL127864.1|FL127864
EST:     AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
genomic: AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|67011723|gb|CO440472.1|CO440472
EST:     AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
genomic: AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|28909600|gb|CB331007.1|CB331007
EST:     AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAG-GGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
genomic: AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|166565209|gb|EG289767.1|EG289767
EST:     GCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
genomic: GCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
EST: gi|71330937|gb|DR802275.1|DR802275
EST:     AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAG                         GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT
genomic: AAATTGCTGAGAAAGCCAGGGATGCTCTCCTAAGTGGAAAGTTTGACCAGgtaaataatt ... gttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaataatttgaagtttctattagagcactctttcggtttccctgttgcttagcctagcgttgttacagGTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT