1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...atctgattgacacactatattcataaacaatagctatgctaatgcaatatttggaagcaagacttctgcaattttcttagtttgtttctttgatgttcagGACAAAGAATCATCATCCCACATATTTGATGACACTGATGCATCTGCCACTATCCATACAAATAGCGTTAGCCAGCCAACATCTGATTATCTGTCAGATA
species | Zea mays |
transcript | GRMZM5G829738_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGACAGTCAATATTGATCCGAATGATTCACTGGCATGTTCATCAACAATG GACAAAGAATCATCATCCCACATATTTGATGACACTGATGCATCTGCCACTEST: gi|211390375|gb|FL405396.1|FL405396
genomic: GGACAGTCAATATTGATCCGAATGATTCACTGGCATGTTCATCAACAATGgtacagacgt ... tgatgttcagGACAAAGAATCATCATCCCACATATTTGATGACACTGATGCATCTGCCACT
EST: GGACAGTCAATATTGATCCGAATGATTCACTGGCATGTTCATCAACAATG GACAAAGAATCATCATCCCACATATTTGATGACACTGATGCATCTGCCACT
genomic: GGACAGTCAATATTGATCCGAATGATTCACTGGCATGTTCATCAACAATGgtacagacgt ... tgatgttcagGACAAAGAATCATCATCCCACATATTTGATGACACTGATGCATCTGCCACT
aatatttggaagcaagacttctgcaattttcttagtttgtttctttgatgttcagGACAAAGAATCATCATCCCACATATTTGATGACACTGATGCATCTGCCACTATCCATACAAATAGCGTTAGCCAGCCAACATCTGATTATCTGTCAGATA
ctttgat putative branch site (score: 108)
tttgtttcttt CT-rich tract
aattttcttagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctgattgacacactatattcataaacaatagctatgctaatgcaatatttggaagcaagacttctgcaattttcttagtttgtttctttgatgttcagGACAAAGAATCATCATCCCACATATTTGATGACACTGATGCATCTGCCACTATCCATACAAATAGCGTTAGCCAGCCAACATCTGATTATCTGTCAGATA
- ctgattg
- - - - - - - - - - - - -aacaata
- - - - - - - - - - - - - - - - gctatgc
- - - - - - - - - - - - - - - - - - - - aatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttctgc