Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catgtactagcctctattgtttggggtgttaaggtgattagtgaaagcttgagataggtatatgctaatgagttttacttgttatccttgcttgtatcagTGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG

Basic information

species Zea mays
transcript GRMZM5G824831_T08
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G824831_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g42320.1 (Oryza sativa), 3'ss of exon 5
catgtactagcctctattgtttggggtgttaaggtgattagtgaaagcttgagataggtatatg-ctaatgagttttacttgttatccttgcttgtatcagTGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG
    |  |     ||   ||   |     |      |    ||||    |||  ||     ||  || | |  |    |  |     |||| ||||  ||||||||| |||||||||||||||||| | |||||||| ||||| |||||||||||||| ||| ||||||||
-gattggtgaatcctgaagtacagttcactccttaaagatatgaatatatgatgtaaccgaatttctgaggcatgactcacggccaacttgtttgttgcagTGGTGTAAGACCATTTGGAGTATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAG

upper sequence: GRMZM5G824831_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g42320.4 (Oryza sativa), 3'ss of exon 6
catgtactagcctctattgtttggggtgttaaggtgattagtgaaagcttgagataggtatatg-ctaatgagttttacttgttatccttgcttgtatcagTGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG------------------------------
    |  |     ||   ||   |     |      |    ||||    |||  ||     ||  || | |  |    |  |     |||| ||||  ||||||||| |||||||||||||||||| | |||||||| ||||| |||||||||||||| ||| ||||||||                              
-gattggtgaatcctgaagtacagttcactccttaaagatatgaatatatgatgtaaccgaatttctgaggcatgactcacggccaacttgtttgttgcagTGGTGTAAGACCATTTGGAGTATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGGTATGCAGATAGCTGCGTGATAGGGGCTCT

upper sequence: GRMZM5G824831_T02 (Zea mays), 3'ss of exon 7
lower sequence: Vv01s0011g01960.t01 (Vitis vinifera), 3'ss of exon 6
--catgtactagcctctattgtttggggtgttaaggtgattagtgaaagcttgagataggtatatgctaatgagt-tttacttgttatccttgcttgtatcagTGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG
    |   | |  |   |   | ||   |    | |    |||  ||||||  |  ||  || |||    |   | | |  |  || | |||  |  ||| |||||||| || || |||||||||||||||||| ||||||| | |||||||||||| || || ||||| |||
attttaagcaatgcataaacctctgaattacagaagcatatag-aaaagctcaat-tatttaaatgaagtttgatatcttttctttcttcttattcctat-agTGGTGTAAGGCCCTTTGGAGTATCACTGTTGGTTGCTGGTTTTGATGACAATGGTCCACAATTGTACCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148956338|gb|EC902144.2|EC902144
EST:     CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGG                         TGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
genomic: CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGGgtatgtaact ... cttgtatcagTGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
EST: gi|148952476|gb|EC898302.2|EC898302
EST:     CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGG                         TGGAGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
genomic: CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGGgtatgtaact ... cttgtatcagTGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
EST: gi|71447361|gb|DR828411.1|DR828411
EST:     CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGG                         TGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
genomic: CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGGgtatgtaact ... cttgtatcagTGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
EST: gi|211156514|gb|FL164228.1|FL164228
EST:     CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAKTTCACACAGTCAGG                         TGGTGTGAGACCATTTGGAGTATCACTGT
genomic: CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGGgtatgtaact ... cttgtatcagTGGTGTGAGACCATTTGGAGTATCACTGT
EST: gi|211269953|gb|FL444406.1|FL444406
EST:     CAGTTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGG                         TGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
genomic: CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGGgtatgtaact ... cttgtatcagTGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
EST: gi|149076954|gb|EE165611.2|EE165611
EST:     CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGG                         TGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
genomic: CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGGgtatgtaact ... cttgtatcagTGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
EST: gi|211264909|gb|FL208725.1|FL208725
EST:     AGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAAGT-CACACAGTCAGG                         TGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
genomic: AGCTTGTACGAGAGACTGCTGCTGTCATGCAGGA-GTTCACACAGTCAGGgtatgtaact ... cttgtatcagTGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
EST: gi|6952542|gb|AW424610.1|AW424610
EST:     CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGG                         TGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
genomic: CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGGgtatgtaact ... cttgtatcagTGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
EST: gi|211264914|gb|FL208730.1|FL208730
EST:     CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGG                         TGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGAC
genomic: CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGGgtatgtaact ... cttgtatcagTGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGAC
EST: gi|78112696|gb|DV531090.1|DV531090
EST:     CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGG                         TGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
genomic: CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGGgtatgtaact ... cttgtatcagTGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
EST: gi|148987620|gb|EE031494.2|EE031494
EST:     CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGG                         TGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
genomic: CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGGgtatgtaact ... cttgtatcagTGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
EST: gi|211252214|gb|FK953395.1|FK953395
EST:     CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGG                         TGGTGTGAGACCATTT
genomic: CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGGgtatgtaact ... cttgtatcagTGGTGTGAGACCATTT
EST: gi|5268558|gb|AI770522.1|AI770522
EST:     CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGG                         TGGTGTGAGACCATTTGTAGTATCACTGTTGATTGCTGGGTATGATGACAA
genomic: CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGGgtatgtaact ... cttgtatcagTGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
EST: gi|71445140|gb|DR826190.1|DR826190
EST:     CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGG                         TGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACCA
genomic: CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGGgtatgtaact ... cttgtatcagTGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
EST: gi|211149323|gb|FL312581.1|FL312581
EST:     CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGG                         TGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
genomic: CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGGgtatgtaact ... cttgtatcagTGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
EST: gi|32830197|gb|CD969875.1|CD969875
EST:     ACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGG                         TGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
genomic: ACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGGgtatgtaact ... cttgtatcagTGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
EST: gi|211154922|gb|FL164220.1|FL164220
EST:     CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGG                         TGGTGTGAGACCATTTGGAGTATCACTGTTGA
genomic: CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGGgtatgtaact ... cttgtatcagTGGTGTGAGACCATTTGGAGTATCACTGTTGA
EST: gi|211252215|gb|FK953396.1|FK953396
EST:     CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGG                         TGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
genomic: CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGGgtatgtaact ... cttgtatcagTGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
EST: gi|6194486|gb|AW146590.1|AW146590
EST:     CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGG                         TGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
genomic: CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGGgtatgtaact ... cttgtatcagTGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
EST: gi|211158115|gb|FL164244.1|FL164244
EST:     CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGG                         TGGTGTGAGACCATTTG
genomic: CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGGgtatgtaact ... cttgtatcagTGGTGTGAGACCATTTG
EST: gi|74241051|gb|DT648965.1|DT648965
EST:     CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGG                         G
genomic: CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGGgtatgtaact ... cttgtatcag-
EST: gi|74241051|gb|DT648965.1|DT648965
EST:     CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGG                         G
genomic: CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGGgtatgtaact ... cttgtatcag-
EST: gi|78112697|gb|DV531091.1|DV531091
EST:     CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGG                         TGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
genomic: CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGGgtatgtaact ... cttgtatcagTGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
EST: gi|67024880|gb|CO453629.1|CO453629
EST:     CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGG                         TGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
genomic: CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGGgtatgtaact ... cttgtatcagTGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
EST: gi|32795340|gb|CD947576.1|CD947576
EST:     CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGG                         TGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
genomic: CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGGgtatgtaact ... cttgtatcagTGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
EST: gi|211321302|gb|FL273340.1|FL273340
EST:     CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGG                         TGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
genomic: CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGGgtatgtaact ... cttgtatcagTGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
EST: gi|211153313|gb|FL164201.1|FL164201
EST:     CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGG                         TGGTGTGAGACCATTTGGAGTATCACTGTTG
genomic: CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGGgtatgtaact ... cttgtatcagTGGTGTGAGACCATTTGGAGTATCACTGTTG
EST: gi|211153309|gb|FL164197.1|FL164197
EST:     CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGG                         TGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA
genomic: CAGCTTGTACGAGAGACTGCTGCTGTCATGCAGGAGTTCACACAGTCAGGgtatgtaact ... cttgtatcagTGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcttgagataggtatatgctaatgagttttacttgttatccttgcttgtatcagTGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG
                 tgctaat  putative branch site (score: 2)
                                       tccttgctt  putative PPT
                           ttttactt  TA-rich tract