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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttgatgtatttctttaactgattcttaataaattattgatgtactctatatccacccgccaactatggtcacacaatatatgttgctctaaagtttacagctgcaaactcaacaacagttgattttctggcagGTTCAAGTGGGGTCAATTCTGAAGCTAGTACAAGTATCAAGGTCCCAAAAGTTTACTGGAACTATACATGTAAAACCATATTGACACTGGAATGGATTGA

Basic information

species Zea mays
transcript GRMZM5G817551_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G817551_T04 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os07g27480.1 (Oryza sativa), 3'ss of exon 7
gtgagtttgatgtatttctttaactgattcttaataaattattgatgtactctatatccacccgccaactatggtcacacaatatatgttgctctaaagtttacagctgcaaactcaacaacagttgattttctggcagGTTCAAGTGGGGTCAATTCTGAAGCTAGTACAAGTATCAAGGTCCCAAAAGTTTACTGGAACTATACATGTAAAACCATATTGACACTGGAATGGATTGA
                                    | ||  |  ||  || |     ||      | || |||        ||| | ||   | ||||   || |  |     |||       ||  ||| ||||||| || | |||||   |  || | || | | ||||||||||| |||||||| || |||||||| | |||| ||||| | ||||| || || |||||||||||
------------------------------------atttcctagtgctctttcagctcagat-tgatctctggctctctgctatttattatac-aaagcacactgtagggccatcattg-tgttttttttcctggcagATTTAGGTGGGAATAGCTCCGGAGATGGGACAAGTATCAAAGTCCCAAAGGTCTACTGGAATTTTACACGTAAATCTATATTAACTCTAGAATGGATTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgttgctctaaagtttacagctgcaaactcaacaacagttgattttctggcagGTTCAAGTGGGGTCAATTCTGAAGCTAGTACAAGTATCAAGGTCCCAAAAGTTTACTGGAACTATACATGTAAAACCATATTGACACTGGAATGGATTGA
                                            ttttct  CT-rich tract
          taaagttta  TA-rich tract