Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcacaactgtagattcgctgaaagttttttcggacctgtttgaattatatttttttaatagtgaattgatagctagtcaatcatgtattggtgtaatttggttgtaagttactctttacttgaatcttcttcagGAAGTTAGAAGACGCGGCCTCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGATAATGACATCCCT

Basic information

species Zea mays
transcript GRMZM5G816636_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G816636_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os06g05860.1 (Oryza sativa), 3'ss of exon 7
gtaagcacaactgtagattcgctgaaagttttttcggacctgtttgaattatattttt-ttaatagtgaattgatagctagtcaatcatgtattggtgtaatttggttgtaagttactctttacttgaatcttctt--cagGAAGTTAGAAGACGCGGCCTCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGATAATGACATCCCT
                                        |     |||  |||  |  || | |||  ||  |  | || ||   | | | ||   ||||  || |||||| |    || |  ||| |   | ||  |||||  |||||||||| || ||||| ||| |||||||||||||||||||||| ||||||||||| || || 
---------------------------------------ttaaccaaatggtataataattgaaagtcgatcaactg-tattccccctttttttta-gtaacatgtttgtaaatgtgactatgattggactctttttacagGAGATTAGAAGACGTGGTCTCAAGGTTGCTGTTGCTGGCATTCCAAAGACGATTGATAATGATATACCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcatgtattggtgtaatttggttgtaagttactctttacttgaatcttcttcagGAAGTTAGAAGACGCGGCCTCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGATAATGACATCCCT
                                             tcttcttc  CT-rich tract
            tgtaattt  TA-rich tract