1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aaggaattatatgacttctctaatctcctgtatatatcttatgacgcttgtttacttgatgaactctacatctgaaataacaaatgaatcctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACCACACTTCTTTGTTAATGTTGCTGATATCCATTT
species | Zea mays |
transcript | GRMZM5G812553_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACEST: gi|40334416|gb|CK368486.1|CK368486
genomic: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAAC
EST: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCNAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACEST: gi|50336722|gb|CO531848.1|CO531848
genomic: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAAC
EST: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACEST: gi|71764065|gb|DR962002.1|DR962002
genomic: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAAC
EST: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACEST: gi|91878207|gb|EB408164.1|EB408164
genomic: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAAC
EST: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACGTAGEST: gi|76285904|gb|DV025472.1|DV025472
genomic: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAG
EST: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACEST: gi|89759547|gb|DY688342.1|DY688342
genomic: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAAC
EST: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACEST: gi|30307231|gb|CD001904.1|CD001904
genomic: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAAC
EST: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACEST: gi|149080870|gb|EE169951.2|EE169951
genomic: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAAC
EST: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACEST: gi|32867364|gb|CF007046.1|CF007046
genomic: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAAC
EST: CCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACEST: gi|93281461|gb|EB673725.1|EB673725
genomic: CCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAAC
EST: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACEST: gi|76021472|gb|DT948642.1|DT948642
genomic: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAAC
EST: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACEST: gi|148976019|gb|EE025878.2|EE025878
genomic: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAAC
EST: GACAAATGATCCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACEST: gi|50322460|gb|CO517586.1|CO517586
genomic: GACAAATGATCCCC-ATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAAC
EST: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACEST: gi|32933409|gb|CF038221.1|CF038221
genomic: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAAC
EST: GGACGAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACEST: gi|78105461|gb|DV523879.1|DV523879
genomic: GGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAAC
EST: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACEST: gi|50334433|gb|CO529559.1|CO529559
genomic: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAAC
EST: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACEST: gi|71774560|gb|DR972438.1|DR972438
genomic: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAAC
EST: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACEST: gi|91051589|gb|EB162007.1|EB162007
genomic: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAAC
EST: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACEST: gi|78085115|gb|DV513508.1|DV513508
genomic: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAAC
EST: GACAAATGATCCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACEST: gi|78078210|gb|DV506625.1|DV506625
genomic: GACAAATGATCCCC-ATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAAC
EST: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACEST: gi|91878508|gb|EB408465.1|EB408465
genomic: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAAC
EST: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACGTAGGCGTGATGGAEST: gi|78105462|gb|DV523880.1|DV523880
genomic: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGA
EST: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACEST: gi|71436209|gb|DR817259.1|DR817259
genomic: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAAC
EST: GACAAATGATCCCCATGACGCGATTGATCGAATTG--AG-- ---TAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACEST: gi|67022745|gb|CO451494.1|CO451494
genomic: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAAC
EST: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACEST: gi|78121934|gb|DV540318.1|DV540318
genomic: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAAC
EST: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACEST: gi|78113487|gb|DV531878.1|DV531878
genomic: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAAC
EST: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACEST: gi|76285903|gb|DV025471.1|DV025471
genomic: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAAC
EST: ATTTGGCTGGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACEST: gi|211469689|gb|FK976086.1|FK976086
genomic: ATTTGGCTGGACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAAC
EST: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACEST: gi|40335239|gb|CK369309.1|CK369309
genomic: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAAC
EST: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACEST: gi|78121935|gb|DV540319.1|DV540319
genomic: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAAC
EST: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACEST: gi|71298751|gb|DR785364.1|DR785364
genomic: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAAC
EST: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACEST: gi|8102673|gb|AW927320.1|AW927320
genomic: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAAC
EST: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACATAGGCGTGATGGAGGGTCCAAACAGAGAACEST: gi|71436272|gb|DR817322.1|DR817322
genomic: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAAC
EST: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACEST: gi|32867365|gb|CF007047.1|CF007047
genomic: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAAC
EST: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACEST: gi|30087080|gb|CB885288.1|CB885288
genomic: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAAC
EST: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACGTAEST: gi|31406361|gb|CD485093.1|CD485093
genomic: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTA
EST: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAG GAGTAAAATCAAAACTAGACGTA
genomic: GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttcct ... ctttttgcagGAGTAAAATCAAAACTAGACGTA
gcttgtttacttgatgaactctacatctgaaataacaaatgaatcctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACCACACTTCTTTGTTAATGTTGCTGATATCCATTT
aaataac putative branch site (score: 156)
tcctttttgc putative PPT
aaataacaaatgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaggaattatatgacttctctaatctcctgtatatatcttatgacgcttgtttacttgatgaactctacatctgaaataacaaatgaatcctttttgcagGAGTAAAATCAAAACTAGACGTAGGCGTGATGGAGGGTCCAAACAGAGAACCACACTTCTTTGTTAATGTTGCTGATATCCATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - -tctcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctacatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taacaaa