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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacattgtgcaaaaacaatataacaaagttcgctgcgtgttttcctctggatgtttgctcagaaacgtgtggcattacgtcgttgtttacagGGAAATTCCTACATTGCTTCAAAAGTCCCACCGCAGCCCATAGAGATATGGGCATGTGAG

Basic information

species Zea mays
transcript GRMZM5G804772_T03
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110945801|gb|EE165958.1|EE165958
EST:     GCAATTACAGCAGGGCTTGCTACTTTTGGTCGTATTGGAAAG                         GGAAATTCCTACATTGCTTCAAAAGTCCCACCGCAGCCCATAGAGATATGG
genomic: GCAATTACAGCAGGGCTTGCTACTCTTGGTCGTATTGGAAAGgtacattgtg ... ttgtttacagGGAAATTCCTACATTGCTTCAAAAGTCCCACCGCAGCCCATAGAGATATGG
EST: gi|60356272|gb|DN223245.1|DN223245
EST:     GCAATTACAGCAGGGCTTGCTACTCTTGGTCGTATTGGAAAG                         GGAAATTCCTACATTGCTTCAAAAGTCCCACCGCAGCCCATAGAGATATGG
genomic: GCAATTACAGCAGGGCTTGCTACTCTTGGTCGTATTGGAAAGgtacattgtg ... ttgtttacagGGAAATTCCTACATTGCTTCAAAAGTCCCACCGCAGCCCATAGAGATATGG
EST: gi|149027058|gb|EE046379.2|EE046379
EST:     TTGACAGCAATTACAGCAGGGCTTGTTTCTCTTGGTCGTATTGGAAAAG                         GGAAATTCCTACATTGCTTCAAAAGTCCCACCGCAGCCCATAGAGATATG
genomic: TTGACAGCAATTACAGCAGGGCTTGCTACTCTTGGTCGTATTGG-AAAGgtacattgtg ... ttgtttacagGGAAATTCCTACATTGCTTCAAAAGTCCCACCGCAGCCCATAGAGATATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttttcctctggatgtttgctcagaaacgtgtggcattacgtcgttgtttacagGGAAATTCCTACATTGCTTCAAAAGTCCCACCGCAGCCCATAGAGATATGGGCATGTGAG
                                             ttgttta  TA-rich tract