1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtattatcccgcctacattaattgtttgttttttctccctttcccataaattgacgctttctcttgcagATAGGCCACAATGTGGTCATTGGGAAGTGCTGCATGATATGTGGGCAAGTAGGGATTGCTGGTTCTGCAAC
species | Zea mays |
transcript | GRMZM5G803610_T03 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGAGAGAGACAACGGTCGGAAATCATACCAAGATTGATAATCTGGTCCAG ATAGGCCACAATGTGGTCATTGGGAAGTGCTGCATGATATGTGGGCAAGTAEST: gi|74232550|gb|DT640464.1|DT640464
genomic: GGAGAGAGACAACGGTCGGAAATCATACCAAGATTGATAATCTGGTCCAGgtattatccc ... tctcttgcagATAGGCCACAATGTGGTCATTGGGAAGTGCTGCATGATATGTGGGCAAGTA
EST: GGAGAGAGACAACGGTCGGAAATCATACCAAGATTGATAATCTGGTCCAG ATAGGCCACAATGTGGTCATTGGGAAGTGCTGCATGATATGTGGGCAAGTAEST: gi|60348311|gb|DN215284.1|DN215284
genomic: GGAGAGAGACAACGGTCGGAAATCATACCAAGATTGATAATCTGGTCCAGgtattatccc ... tctcttgcagATAGGCCACAATGTGGTCATTGGGAAGTGCTGCATGATATGTGGGCAAGTA
EST: GGAGAGAGACAACGGTCGGAAATCATACCAAGATTGATAATCTGGTCCAG ATAGGCCACAATGTGGTCATTGGGAAGTGCTGCATGATATGTGGGCAAGTA
genomic: GGAGAGAGACAACGGTCGGAAATCATACCAAGATTGATAATCTGGTCCAGgtattatccc ... tctcttgcagATAGGCCACAATGTGGTCATTGGGAAGTGCTGCATGATATGTGGGCAAGTA
acattaattgtttgttttttctccctttcccataaattgacgctttctcttgcagATAGGCCACAATGTGGTCATTGGGAAGTGCTGCATGATATGTGGGCAAGTAGGGATTGCTGGTTCTGCAAC
aattgac putative branch site (score: 3)
cgctttctctt CT-rich tract
aattgtttgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattatcccgcctacattaattgtttgttttttctccctttcccataaattgacgctttctcttgcagATAGGCCACAATGTGGTCATTGGGAAGTGCTGCATGATATGTGGGCAAGTAGGGATTGCTGGTTCTGCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC