1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gcatgtgcttccgttgcattattgtagcatactgatatctcaagtttgcaactcttctataaagaaaacactcttactggattcctgtatgacacgtcagGTTGACAAGAAGGTTGCTGATGGTCTGTTGAGACTCATCCTTCTGAAAGGACCACTAGGGCGCTGTGTCTTTACCGGGGATTATGACCGGAATGCGCTCG
species | Zea mays |
transcript | GRMZM2G573867_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGCACCTCCAGAGACCATGACCGTGGAGAAGTTTAAAAACATCATTGCT GTTGACAAGAAGGTTGCTGATGGTCTGTTGAGACTCATCCTTCTGAEST: gi|30052184|gb|AI065473.2|AI065473
genomic: TTGCACCTCCAGAGACCATGACCGTGGAGAAGTTTAAAAACATCATTGCTgtaagcacct ... gacacgtcagGTTGACAAGAAGGTTGCTGATGGTCTGTTGAGACTCATCCTTCTGA
EST: TTGCACCTCCAGAGACCATGACCGTGGAGAAGTTTAAAAACATCATTGCT GTTGACAAGAAGGTTGCTGATGGTCTGTTGAGACTCATCCTTCTGAAAGGAEST: gi|32849355|gb|CD989036.1|CD989036
genomic: TTGCACCTCCAGAGACCATGACCGTGGAGAAGTTTAAAAACATCATTGCTgtaagcacct ... gacacgtcagGTTGACAAGAAGGTTGCTGATGGTCTGTTGAGACTCATCCTTCTGAAAGGA
EST: TTGCACCTCCAGAGACCATGACCGTGGAGAAGTTTAAAAACATCATTGCT GTTGACAAGAAGGTTGCTGATGGTCTGTTGAGACTCATCCTTCTGAAAGGA
genomic: TTGCACCTCCAGAGACCATGACCGTGGAGAAGTTTAAAAACATCATTGCTgtaagcacct ... gacacgtcagGTTGACAAGAAGGTTGCTGATGGTCTGTTGAGACTCATCCTTCTGAAAGGA
ttgcaactcttctataaagaaaacactcttactggattcctgtatgacacgtcagGTTGACAAGAAGGTTGCTGATGGTCTGTTGAGACTCATCCTTCTGAAAGGACCACTAGGGCGCTGTGTCTTTACCGGGGATTATGACCGGAATGCGCTCG
ctcttac putative branch site (score: 52)
ttctataaagaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatgtgcttccgttgcattattgtagcatactgatatctcaagtttgcaactcttctataaagaaaacactcttactggattcctgtatgacacgtcagGTTGACAAGAAGGTTGCTGATGGTCTGTTGAGACTCATCCTTCTGAAAGGACCACTAGGGCGCTGTGTCTTTACCGGGGATTATGACCGGAATGCGCTCG
- - -tgcttcc
- - - - - - -ttgcatt
- - - - - - - - - - - - - -catactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attcctg