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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaggcagagctcttcaaaaaagaagtgttaatgtgatgtgtcctgatgaggcaacaatcgcaacactgcaagatttcttactttgtcttttgttttgcagTTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCAATCTGCAAGCACCAGGTCAGTGATGGGTGGCATGCCACAGGCAACGGTG

Basic information

species Zea mays
transcript GRMZM2G492252_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G492252_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os03g16570.3 (Oryza sativa), 3'ss of exon 8
aaggcagagctcttcaaaaaagaagtgttaatg-tgatgtgtcctgatgaggcaacaatcgcaacactgcaagattt-cttactttgtcttttgttttgcagTTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCAATCTGCAAGCACCAGGTCAGTGATGGGTGGCATGCCACAGGCAACGGTG
       |||| | ||   ||| | ||  | || || | |    |  |   |  |  |  |    |||||||| ||| ||||||||  |  |||||||||||||||| | |||||||||||| |||||| ||||||||||||| ||||||||| | ||||||||||  || || |||||||||||||    ||   | | | 
-gtttttagctttccatcgaaggattgacattggtgctattagttttttgtgtcatgag-gtgggactgcaaggtttacttactttcccacttgttttgcagTTTCATGCAAACTGCATCGATCCATGGTTGCGCCAACAGGGAACATGCCCAGTTTGCAAGCACCGTGTAAGCGATGGGTGGCATGGTGAAGCAGATGCTT

upper sequence: GRMZM2G492252_T02 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA11G34130.2 (Glycine max), 3'ss of exon 8
------aaggcagagctcttcaaaaaagaagtgttaatgtgatgtgtcctgatgaggcaacaatcgcaacactgcaagatttcttactttgtcttttgttttgcagTTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCAATCTGCAAGCACCAGGTCAGTGATGGGTGGCATGCCACAGGCAACGGTG
      | | | ||  | |  | ||||  |||||| || |  ||| |     |    |   ||| | |   |||  |  ||  |||  ||   || | ||||| |||||||||  ||||||||||| || |||||||||||||| || ||||||||  | || ||    |  |   |   ||| |||  || ||  ||  |   ||
acaagtatgtctgaagt-tcaataaaatcagtgttgatattctgtatttatttatctcgtgaatggta---ctgacaccttgtttatgtt--tttattttttgaagTTTCACGCTAACTGCATCGATCCCTGGCTGCGCCAACAAGGGACATGCCCTGTATGTAAATTTCGAGCTGGATCTGGTTGGAGTGACAATGGACATAATG

upper sequence: GRMZM2G492252_T02 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA18G04160.1 (Glycine max), 3'ss of exon 9
----aaggcagagctcttcaaaaaagaagtgttaatgtgatgtgtcctgatgaggcaacaatcgcaacactgcaagatttcttactttgtcttttgttttgcagTTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCAATCTGCAAGCACCAGGTCAGTGATGGGTGGCATGCCACAGGCAACGGTG
     | |   |    |  | ||||  | |||| || |  ||  |  |  | |    |          | ||  |  ||  |||  ||   || | ||||| ||||||||| ||| |||||||| || |||||||||||||| || ||||||||  | || ||    |  |   |   ||| |||  || ||  ||  |   | 
acatgatgtctaaagttcaataaaatcattgttgatattctgcatt-tatttatctcatgtgaatggtattgacaccttgtttatgtt--tttattttttgaaGTTTCACGCAAATTGCATCGATCCCTGGCTGCGCCAACAAGGGACATGCCCTGTATGTAAATTTCGAGCTGGATCTGGTTGGAGTGACAATGGACATAAT-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78074674|gb|DV503108.1|DV503108
EST:     AGCAAGTCATGGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAG                         TTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
genomic: AGCAAGTCATGGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAGgtaatcatgc ... tgttttgcagTTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
EST: gi|60359234|gb|DN226207.1|DN226207
EST:     AGCAAGTCATGGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAG                         TTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
genomic: AGCAAGTCATGGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAGgtaatcatgc ... tgttttgcagTTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
EST: gi|89760189|gb|DY688710.1|DY688710
EST:     TGAGAAGCCTACCATGCTTGCATCAG                         TTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
genomic: TGAGAAGCCTACCATGCTTGCATCAGgtaatcatgc ... tgttttgcagTTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
EST: gi|211241084|gb|FL183326.1|FL183326
EST:     AGCAAGTCATGGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAG                         TTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
genomic: AGCAAGTCATGGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAGgtaatcatgc ... tgttttgcagTTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
EST: gi|91052810|gb|EB163228.1|EB163228
EST:     AGCAAGTCATGGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAG                         TTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
genomic: AGCAAGTCATGGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAGgtaatcatgc ... tgttttgcagTTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
EST: gi|78123225|gb|DV541609.1|DV541609
EST:     AGCAAGTCATGGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAG                         TTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
genomic: AGCAAGTCATGGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAGgtaatcatgc ... tgttttgcagTTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
EST: gi|110517661|gb|EE022248.1|EE022248
EST:     AGCAAGTCATGGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAG                         TTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
genomic: AGCAAGTCATGGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAGgtaatcatgc ... tgttttgcagTTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
EST: gi|211238857|gb|FL183325.1|FL183325
EST:     AGCAAGTCATGGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAG                         TTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
genomic: AGCAAGTCATGGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAGgtaatcatgc ... tgttttgcagTTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
EST: gi|78092370|gb|DV520744.1|DV520744
EST:     AGCAAGTCATGGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAG                         TTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
genomic: AGCAAGTCATGGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAGgtaatcatgc ... tgttttgcagTTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
EST: gi|88758240|gb|DY542381.1|DY542381
EST:     AGCAAGTCATGGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAG                         TTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
genomic: AGCAAGTCATGGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAGgtaatcatgc ... tgttttgcagTTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
EST: gi|88754551|gb|DY538692.1|DY538692
EST:     AGCAAGTCATGGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAG                         TTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
genomic: AGCAAGTCATGGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAGgtaatcatgc ... tgttttgcagTTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
EST: gi|93014827|gb|EB640347.1|EB640347
EST:     AGCAAGTCATGGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAG                         TTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
genomic: AGCAAGTCATGGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAGgtaatcatgc ... tgttttgcagTTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
EST: gi|7135740|gb|AW498241.1|AW498241
EST:     AGCAAGTCATGGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAG                         TTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
genomic: AGCAAGTCATGGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAGgtaatcatgc ... tgttttgcagTTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
EST: gi|211111576|gb|FL459318.1|FL459318
EST:     AGCAAGTCATGGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAG                         TTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
genomic: AGCAAGTCATGGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAGgtaatcatgc ... tgttttgcagTTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
EST: gi|16922425|gb|BM075574.1|BM075574
EST:     AGCAAGTCATGGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAG                         TTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
genomic: AGCAAGTCATGGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAGgtaatcatgc ... tgttttgcagTTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
EST: gi|71774881|gb|DR972759.1|DR972759
EST:     AGCAAGTCATGGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAG                         TTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
genomic: AGCAAGTCATGGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAGgtaatcatgc ... tgttttgcagTTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
EST: gi|60352872|gb|DN219845.1|DN219845
EST:     AGCAAGTCATGGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAG                         TTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
genomic: AGCAAGTCATGGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAGgtaatcatgc ... tgttttgcagTTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
EST: gi|86467860|gb|DY234230.1|DY234230
EST:     AGCAAGTCATGGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAG                         TTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
genomic: AGCAAGTCATGGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAGgtaatcatgc ... tgttttgcagTTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
EST: gi|101381640|gb|EB812877.1|EB812877
EST:     GGTGGGTGATTTGTTGAGAAGCCTACCATGCTTGCATCAG                         TTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA
genomic: GGTGGGTGATCTGTTGAGAAGCCTACCATGCTTGCATCAGgtaatcatgc ... tgttttgcagTTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgaggcaacaatcgcaacactgcaagatttcttactttgtcttttgttttgcagTTTCACGTAAACTGCATCGACCCATGGCTGCGCCAACAGGGTACATGCCCAATCTGCAAGCACCAGGTCAGTGATGGGTGGCATGCCACAGGCAACGGTG
                             ttcttac  putative branch site (score: 2)
                            tttcttactttgtctt  CT-rich tract
                                          ttttgtttt  TA-rich tract