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...tgatccgaacaccagatgaaagtcttctttgaaatagataaccatattcgcctcactttttttgttcaccacaactacctgagatttccttggcctgcagCTTGTGAAGCTACCACGATCACCTACTGTTGATGATATTCTAAAGAAGTACTTGGAACACCGGGCAAAGAAGGATGGCAA
species | Zea mays |
transcript | GRMZM2G484880_T04 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGGTAAGEST: gi|76912438|gb|DV164732.1|DV164732
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGAT--G---Ggtaaggtatt ... tggcct
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG GEST: gi|76912438|gb|DV164732.1|DV164732
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatt ... tggcctgcag-
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG GEST: gi|76912438|gb|DV164732.1|DV164732
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatt ... tggcctgcag-
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG GEST: gi|76912438|gb|DV164732.1|DV164732
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatt ... tggcctgcag-
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG GEST: gi|76912438|gb|DV164732.1|DV164732
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatt ... tggcctgcag-
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG GEST: gi|76912438|gb|DV164732.1|DV164732
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatt ... tggcctgcag-
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG GEST: gi|6031476|gb|AW076378.1|AW076378
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatt ... tggcctgcag-
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG GEST: gi|6031476|gb|AW076378.1|AW076378
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatt ... tggcctgcag-
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG GEST: gi|6031476|gb|AW076378.1|AW076378
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatt ... tggcctgcag-
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG GEST: gi|6031476|gb|AW076378.1|AW076378
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatt ... tggcctgcag-
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG GEST: gi|6031476|gb|AW076378.1|AW076378
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatt ... tggcctgcag-
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG GEST: gi|6031476|gb|AW076378.1|AW076378
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatt ... tggcctgcag-
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG GEST: gi|60358481|gb|DN225454.1|DN225454
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatt ... tggcctgcag-
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG CTTGTGAAGCTACCACGATCACCTACTGTTGATGATATTCTAAAGAAGTACEST: gi|26456042|gb|CA827625.1|CA827625
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatt ... tggcctgcagCTTGTGAAGCTACCACGATCACCTACTGTTGATGATATTCTAAAGAAGTAC
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG GEST: gi|26456042|gb|CA827625.1|CA827625
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatt ... tggcctgcag-
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG GEST: gi|26456042|gb|CA827625.1|CA827625
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatt ... tggcctgcag-
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG GEST: gi|26456042|gb|CA827625.1|CA827625
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatt ... tggcctgcag-
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG GEST: gi|26456042|gb|CA827625.1|CA827625
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatt ... tggcctgcag-
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG GEST: gi|26456042|gb|CA827625.1|CA827625
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatt ... tggcctgcag-
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG GEST: gi|37386752|gb|CF630565.1|CF630565
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatt ... tggcctgcag-
EST: AAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG CTTGTGAAGCTACCACGATCACCTACTGTTGATGATATTCTAAAGAAGTACEST: gi|71438521|gb|DR819571.1|DR819571
genomic: AAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatt ... tggcctgcagCTTGTGAAGCTACCACGATCACCTACTGTTGATGATATTCTAAAGAAGTAC
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG GEST: gi|71438521|gb|DR819571.1|DR819571
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatt ... tggcctgcag-
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG GEST: gi|71438521|gb|DR819571.1|DR819571
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatt ... tggcctgcag-
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG GEST: gi|71438521|gb|DR819571.1|DR819571
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatt ... tggcctgcag-
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG GEST: gi|71438521|gb|DR819571.1|DR819571
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatt ... tggcctgcag-
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG GEST: gi|71438521|gb|DR819571.1|DR819571
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatt ... tggcctgcag-
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG GEST: gi|71331879|gb|DR802817.1|DR802817
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatt ... tggcctgcag-
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG GEST: gi|71331879|gb|DR802817.1|DR802817
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatt ... tggcctgcag-
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG GEST: gi|71331879|gb|DR802817.1|DR802817
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatt ... tggcctgcag-
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG GEST: gi|71331879|gb|DR802817.1|DR802817
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatt ... tggcctgcag-
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG GEST: gi|71331879|gb|DR802817.1|DR802817
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatt ... tggcctgcag-
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG GEST: gi|71331879|gb|DR802817.1|DR802817
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatt ... tggcctgcag-
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG G
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatt ... tggcctgcag-
attcgcctcactttttttgttcaccacaactacctgagatttccttggcctgcagCTTGTGAAGCTACCACGATCACCTACTGTTGATGATATTCTAAAGAAGTACTTGGAACACCGGGCAAAGAAGGATGGCAA
gcctcac putative branch site (score: 13)
tttcctt putative PPT
tttttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatccgaacaccagatgaaagtcttctttgaaatagataaccatattcgcctcactttttttgttcaccacaactacctgagatttccttggcctgcagCTTGTGAAGCTACCACGATCACCTACTGTTGATGATATTCTAAAGAAGTACTTGGAACACCGGGCAAAGAAGGATGGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG