1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtttttggatgtttaatctgtaaaacgcttggttaacatgatagcgtgaatttctcaatctatcttttctcaaccaaacttctattttatttgatggcagGAATGGAGGTCATCAAACCAAGGAAGGAATAATGCTGCATATCAGTACAACCGTGAAGGTATCTATGTTAAGCATGGTTCCAGGACCTTCCGTGACGAAG
species | Zea mays |
transcript | GRMZM2G479744_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATGGCAACGTCTTCTGCTTCTCCACTCAATCACCACACCATCCGCTTAAG GAATGGAGGTCATCAAACCAAGGAAGGAATAATGCTGCATATCAGTACAACEST: gi|32860179|gb|CD999860.1|CD999860
genomic: ATGGCAACGTCTTCTGCTTCTCCACTCAATCACCACACCATCCGCTTAAGgtaggcaatc ... ttgatggcagGAATGGAGGTCATCAAACCAAGGAAGGAATAATGCTGCATATCAGTACAAC
EST: ATGGTTTCGTCTTCTGCTTCTCCACTCAATCACCACACCATCCGCTTAAG GAATGGAGGTCATCAAACCAAGGAAGGAATAATGCTGCATATCAGTACAACEST: gi|213183278|gb|FM192491.1|FM192491
genomic: ATGGCAACGTCTTCTGCTTCTCCACTCAATCACCACACCATCCGCTTAAGgtaggcaatc ... ttgatggcagGAATGGAGGTCATCAAACCAAGGAAGGAATAATGCTGCATATCAGTACAAC
EST: ATGGCAACGTCTTCTGCTTCTCCACTCAATCACCACACCATCCGCTTAAG GAATGGAGGTCATCAAACCAAGGAAGGAATAATGCTGCATATCAGTACAACEST: gi|211461237|gb|FL278650.1|FL278650
genomic: ATGGCAACGTCTTCTGCTTCTCCACTCAATCACCACACCATCCGCTTAAGgtaggcaatc ... ttgatggcagGAATGGAGGTCATCAAACCAAGGAAGGAATAATGCTGCATATCAGTACAAC
EST: ATGGCAACGTCTTCTGCTTCTCCACTCAATCACCACACCATCCGCTTAAG GAATGGAGGTCATCAAACCAAGGAAGGAATAATGCTGCATATCAGTACAACEST: gi|6431890|gb|AW172094.1|AW172094
genomic: ATGGCAACGTCTTCTGCTTCTCCACTCAATCACCACACCATCCGCTTAAGgtaggcaatc ... ttgatggcagGAATGGAGGTCATCAAACCAAGGAAGGAATAATGCTGCATATCAGTACAAC
EST: ATGGCAACGTCTTCTGCTTCTCCACTCAATCACCACACCATCCGCTTAAG GAATGGAGGTCATCAAACCAAGGAAGGAATAATGCTGCATATCAGTACAAC
genomic: ATGGCAACGTCTTCTGCTTCTCCACTCAATCACCACACCATCCGCTTAAGgtaggcaatc ... ttgatggcagGAATGGAGGTCATCAAACCAAGGAAGGAATAATGCTGCATATCAGTACAAC
gtgaatttctcaatctatcttttctcaaccaaacttctattttatttgatggcagGAATGGAGGTCATCAAACCAAGGAAGGAATAATGCTGCATATCAGTACAACCGTGAAGGTATCTATGTTAAGCATGGTTCCAGGACCTTCCGTGACGAAG
atttgat putative branch site (score: 112)
cttctattttattt CT-rich tract
aaacttctattttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttttggatgtttaatctgtaaaacgcttggttaacatgatagcgtgaatttctcaatctatcttttctcaaccaaacttctattttatttgatggcagGAATGGAGGTCATCAAACCAAGGAAGGAATAATGCTGCATATCAGTACAACCGTGAAGGTATCTATGTTAAGCATGGTTCCAGGACCTTCCGTGACGAAG
- - ttggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaccaaa