1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gttttgacattcttattgctctcttgtgatgtcgtttatcacagaaaagcaaggatgatgcataatgaacgtctatgatttataatggtatgttcttcagGTTGGGAGTACTCTACTGATGGGAAATGTGAAAAAATGCCATCAACAAATATGCTCAACGTGCACATCCAGTCATTGCCATGCTTTGAGCAGGAAGGAAT
species | Zea mays |
transcript | GRMZM2G478779_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGTGAACGAGGGTAGGATCCAGTGCCCTTACCATG GTTGGGAGTACTCTACTGATGGGAAATGTGAAAAAATGCCATCAACAAATAEST: gi|12046414|gb|BF728553.1|BF728553
genomic: AGTGAACGAGGGTAGGATCCAGTGCCCTTACCATGgtaagtctcc ... tgttcttcagGTTGGGAGTACTCTACTGATGGGAAATGTGAAAAAATGCCATCAACAAATA
EST: TCAGTGAACGAGGGTAGGATCCAGTGCCCTTACCATG GTTGGGAGTACTCTACTGATGGGAAATGTGAAAAAATGCCATCAACAAATAEST: gi|78180437|gb|DV550810.1|DV550810
genomic: TCAGTGAACGAGGGTAGGATCCAGTGCCCTTACCATGgtaagtctcc ... tgttcttcagGTTGGGAGTACTCTACTGATGGGAAATGTGAAAAAATGCCATCAACAAATA
EST: GCTGCATCTTGGTTCAGTGAACGAGGGTAGGATCCAGTGCCCTTACCATG GTTGGGAGTACTCTACTGATGGGAAATGTGAAAAAATGCCATCAACAAATA
genomic: GCTGCATCTTGGTTCAGTGAACGAGGGTAGGATCCAGTGCCCTTACCATGgtaagtctcc ... tgttcttcagGTTGGGAGTACTCTACTGATGGGAAATGTGAAAAAATGCCATCAACAAATA
aaagcaaggatgatgcataatgaacgtctatgatttataatggtatgttcttcagGTTGGGAGTACTCTACTGATGGGAAATGTGAAAAAATGCCATCAACAAATATGCTCAACGTGCACATCCAGTCATTGCCATGCTTTGAGCAGGAAGGAAT
tgttcttc CT-rich tract
tctatgatttataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttgacattcttattgctctcttgtgatgtcgtttatcacagaaaagcaaggatgatgcataatgaacgtctatgatttataatggtatgttcttcagGTTGGGAGTACTCTACTGATGGGAAATGTGAAAAAATGCCATCAACAAATATGCTCAACGTGCACATCCAGTCATTGCCATGCTTTGAGCAGGAAGGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - tgacatt
- - - - - - -tattgct
- - - - - - - - - - - - tgtgatg
- - - - - - - - - - - - - - - - - - - - acagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgcata