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gtgaggccttgctcatataacccagtcacttcggaaacagggtcacgctcttccttaccagttataaaactttttttatagGAGTGGAGAAACTATTATTTCAAATAGTTCAAAAGATGCTGGCACATATTGGCGAACAATGTTGCCATTTTCATATGCTGTTGTATCTGGTGCTATTGGA
species | Zea mays |
transcript | GRMZM2G477146_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TATTGCATGTCATTGGTCTTTGTTGTTGCGTTTAACCATTATCTCTACAG GAGTGGAGAAACTATTATTTCAAATAGTTCAAAAGATGCTGGCACATATTGEST: gi|76918522|gb|DV167332.1|DV167332
genomic: TATTGCATGTCATTGGTCTTTGTTGTTGCGTTTAACCATTATCTCTACAGgtgaggcctt ... ttttttatagGAGTGGAGAAACTATTATTTCAAATAGTTCAAAAGATGCTGGCACATATTG
EST: TATTGCATGTCATTGGTCTTTGTTGTTGCGTTTAACCATTATCTCTACAG GAGTGGAGAAACTATTATTTCAAATAGTTCAAAAGATGCTGGCACATATTGEST: gi|32847829|gb|CD987510.1|CD987510
genomic: TATTGCATGTCATTGGTCTTTGTTGTTGCGTTTAACCATTATCTCTACAGgtgaggcctt ... ttttttatagGAGTGGAGAAACTATTATTTCAAATAGTTCAAAAGATGCTGGCACATATTG
EST: TATTGCATGTCATTGGTCCTTGTTGTTGCATTTAACCATTATCTCTACAG GAGTGGAGAAACTATTATTTCAAATAGTTCAAAAGATGCTGGCACATATTG
genomic: TATTGCATGTCATTGGTCTTTGTTGTTGCGTTTAACCATTATCTCTACAGgtgaggcctt ... ttttttatagGAGTGGAGAAACTATTATTTCAAATAGTTCAAAAGATGCTGGCACATATTG
cacttcggaaacagggtcacgctcttccttaccagttataaaactttttttatagGAGTGGAGAAACTATTATTTCAAATAGTTCAAAAGATGCTGGCACATATTGGCGAACAATGTTGCCATTTTCATATGCTGTTGTATCTGGTGCTATTGGA
tccttac putative branch site (score: 2)
ctttttttat putative PPT
agttataaaacttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggccttgctcatataacccagtcacttcggaaacagggtcacgctcttccttaccagttataaaactttttttatagGAGTGGAGAAACTATTATTTCAAATAGTTCAAAAGATGCTGGCACATATTGGCGAACAATGTTGCCATTTTCATATGCTGTTGTATCTGGTGCTATTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT