Data associated with selected splice site

gtaagttgttccgtagtgacacttttctttcttttctagagaaattggcattactctatataaatgcttgaacttttcttcttttctgtcagAGTGGTGAATTTATGGTTGGGTGCCGAAGTTATCCACAA

RNA-Seq data

 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 39 (downstream exon)
Score: 96

Block sizes: 49 (upstream exon), 39 (downstream exon)
Score: 16

Block sizes: 49 (upstream exon), 34 (downstream exon)
Score: 12

Block sizes: 49 (upstream exon), 35 (downstream exon)
Score: 10

agagaaattggcattactctatataaatgcttgaacttttcttcttttctgtcagAGTGGTGAATTTATGGTTGGGTGCCGAAGTTATCCACAA

                             cttgaacttttcttct  CT-rich tract
            attactctatataaat  TA-rich tract