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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttatcacgattcatcggttatttttaattaatgaattattgggtgcatttggttgatgctgtccctggattctttagGTGCTGATACGACTGATTGGTGCTGATGAGACCATATATTCAAACTATGGTGATACGTTGCAGTGGTTAGAAAATACAAATGTACTTGAAATGATTGCAG

Basic information

species Zea mays
transcript GRMZM2G470292_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G470292_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g40340.3 (Oryza sativa), 3'ss of exon 5
gtaagtttatcacgattcatcggttatttttaattaatgaattattgggtgcatttggttgatgctgtccctgg-attctttagGTGCTGATACGACTGATTGGTGCTGATGAGACCATATATTCAAACTATGGTGATACGTTGCAGTGGTTAGAAAATACAAATGTACTTGAAATGATTGCAG
              |     |  | | |  | | || |   |    |  ||||||||| | |||||| || ||| || ||| ||||| | |||||| ||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| |||| |||||||||||||| |
-----------gtaagcaggctatcaataattactatttgctctgcgcttgcatttggctaatgctgcccttgggatccttcagGTGTTAATACGATTGATTGGTGCTGATGAGACCATATACTCAAACTATGGCGATACATTGCAGTGGTTAGAAAATACAGATGTCCTTGAAATGATTGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71768172|gb|DR966109.1|DR966109
EST:     AGATAGTTGTCCAGCTTGTTGACCTGATTGGCATCACATCGATAATGGAG                         GTGCTGATACGACTGATTGGTGCTGATGAGACCATATATTCAAACTATGGT
genomic: AGATAGTTGTCCAGCTTGTTGACCTGATTGGCATCACATCGATAATGGAGgtaagtttat ... gattctttagGTGCTGATACGACTGATTGGTGCTGATGAGACCATATATTCAAACTATGGT
EST: gi|71304930|gb|DR788597.1|DR788597
EST:     AGATAGTTGTCCAGCTTGTTGACCTGATTGGCATCACATCGATAATGGAG                         GTGCTGATACGACTGATTGGTGCTGATGAGACCATATATTCAAACTATGGT
genomic: AGATAGTTGTCCAGCTTGTTGACCTGATTGGCATCACATCGATAATGGAGgtaagtttat ... gattctttagGTGCTGATACGACTGATTGGTGCTGATGAGACCATATATTCAAACTATGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaattaatgaattattgggtgcatttggttgatgctgtccctggattctttagGTGCTGATACGACTGATTGGTGCTGATGAGACCATATATTCAAACTATGGTGATACGTTGCAGTGGTTAGAAAATACAAATGTACTTGAAATGATTGCAG
                                               ttcttt  CT-rich tract
     ttaatgaattatt  TA-rich tract