Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatgcagctgcagcctgtagcccaagtagcacaagcgatcacagctgcatacatttgacaatcgacactgacatcagtttgcattataactatatgacagAGCATATTGTGGGACAACGATGTGAAGAGCACGAAACATACCTTGAAAGAAATGATAATGCACTATTCTTGCCTTGAACTTCCTGAGGGGAAAGGCGTTA

Basic information

species Zea mays
transcript GRMZM2G468693_T06
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G468693_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os04g44890.1 (Oryza sativa), 3'ss of exon 7
---------------------------------------------------------------------------------------tatgcagctgcagcctg-----tagcccaagtagcacaagcgatcacagctgcatacatttgacaatcgacactgacatcagtttgcattataa--ctatatgacagAGCATATTGTGGGACAACGATGTGAAGAGCACGAAACATACCTTGAAAGAAATGATAATGCACTATTCTTGCCTTGAACTTCCTGAGGGGAAAGGCGTTA
                                                                                        |||  |||  | |  |     | |||| |  | |  ||   || | |  |  || | ||  |    |  || ||||||||  || |||| |||  || |    ||||| || ||||||||||| ||| |||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||| | ||||| || ||||| || |
gtatttgattgttcttcccacaccattcctatttcagtgtcaaagttttattatgttagcatctcctctctcagttgtcctatttttcatggggctaaaacaggtttctttgccctaacatctaaattaataataattttatgcttt--atttccttcattgacatcacattacattgtaattcttttccgcagAGTATTTTGTGGGACAATGATTTGAAGAGCACAAAACAAACCATAAAAGAAATGATAATGCACTATTCTTGCCTTGAATTCCCTGAAGGAAAAGGTGTGA

upper sequence: GRMZM2G468693_T03 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA01G23820.3 (Glycine max), 3'ss of exon 7
tatgcagctgcagcctgtagcccaagtagcacaagcgatca--cagctgcatacatttgacaatcgacactgacatcagtttgcattataactat-atgacagAGCATATTGTGGGACAACGATGTGAAGAGCACGAAACATACCTTGAAAGAAATGATAATGCACTATTCTTGCCTTGAACTTCCTGAGGGGAAAGGCGTTA
  ||   ||    ||  |      | | |   | |   |    |  ||| ||    | |  | |    ||| |  | |   |   || |   | | ||  ||| |||| |||||||| |||||| | || ||||| || ||||| || || |||||||||||||| ||||||||||| ||||| ||||| ||||| |  || |
cttgtt-ctatttcccatgcttatattggtggagggtgttgagcttctggatgtcatgggtactaactactaatgtta--ctattttgtgcttttgatatcagTGCATCTTGTGGGATAACGATTTAAAAAGCACCAAGCATACATTAAAGGAAATGATAATGCATTATTCTTGCCTAGAACTGCCTGAAGGGAAGGCTGTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78022286|gb|DV490673.1|DV490673
EST:     CCAAAGGAAAAACACCTTGGGAGGATGTCAAAAGAGAGTATGTAAGAAAG                         AGCATATTGTGGGACAACGATGTGAAGAGCACGAAACATACCTTGAAAGAA
genomic: CCAAAGGAAAAACACCTTGGGAGGATGTCAAAAGAGAGTATGTAAGAAAGgtatttaatt ... tatatgacagAGCATATTGTGGGACAACGATGTGAAGAGCACGAAACATACCTTGAAAGAA
EST: gi|74237926|gb|DT645840.1|DT645840
EST:     AAGGAAAAACACCTGGGGAGGATGTCAAAAGAGAGTATGTAAGAAAG                         AGCATATTGTGGGACAACGATGTGAAGAGCACGAAACATACCTTGAAAGAA
genomic: AAGGAAAAACACCTTGGGAGGATGTCAAAAGAGAGTATGTAAGAAAGgtatttaatt ... tatatgacagAGCATATTGTGGGACAACGATGTGAAGAGCACGAAACATACCTTGAAAGAA
EST: gi|211207814|gb|FL427954.1|FL427954
EST:     CCAAAGGAAAAACACCTTGGGAGGATGTCAAAAGAGAGTATGTAAGAAAG                         AGCATATTGTGGGACAACGATGTGAAGAGCACGAAACATACCTTGAAAGAA
genomic: CCAAAGGAAAAACACCTTGGGAGGATGTCAAAAGAGAGTATGTAAGAAAGgtatttaatt ... tatatgacagAGCATATTGTGGGACAACGATGTGAAGAGCACGAAACATACCTTGAAAGAA
EST: gi|211300563|gb|FL370635.1|FL370635
EST:     CCAAAGGAAAAACACCTTGGGAGGATGTCAAAAGAGAGYATGTAAGAAAG                         AGCATATTGTGGGACAACGATGYGAAGAGCACGAAACATACCTTGAAAGAA
genomic: CCAAAGGAAAAACACCTTGGGAGGATGTCAAAAGAGAGTATGTAAGAAAGgtatttaatt ... tatatgacagAGCATATTGTGGGACAACGATGTGAAGAGCACGAAACATACCTTGAAAGAA
EST: gi|211529896|gb|FL379285.1|FL379285
EST:     CCAAAGGAAAAACACCTTGGGAGGATGTCAAAAGAGAGNAYGTAAGAAAG                         AGCATATTGTGGGACAACGATGTGAAGAGCACGAAACATACCTTGAAAGAA
genomic: CCAAAGGAAAAACACCTTGGGAGGATGTCAAAAGAGAGTATGTAAGAAAGgtatttaatt ... tatatgacagAGCATATTGTGGGACAACGATGTGAAGAGCACGAAACATACCTTGAAAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcatacatttgacaatcgacactgacatcagtttgcattataactatatgacagAGCATATTGTGGGACAACGATGTGAAGAGCACGAAACATACCTTGAAAGAAATGATAATGCACTATTCTTGCCTTGAACTTCCTGAGGGGAAAGGCGTTA
                                      ttataac  putative branch site (score: 2)
                                     attataactatatga  TA-rich tract