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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagtattactgtgtgatggctgttatatgtttgattttgaagatatgccataattcattatgtaacttatgattaatctaaagttaggctctattgtgctcagtttacgtgaaaatcgacacctactcattttatccttttctattccattgtattgagtatccttcgatctctctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGCTGGTCGGGCGATGACTTTGAAGTTTACAAAGAAGGCTTGATGCACCTAG

Basic information

species Zea mays
transcript GRMZM2G467086_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G467086_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os11g01420.1 (Oryza sativa), 3'ss of exon 7
gtacagtattactgtgtgatggctgttatatgtttgattttgaagatatgccataattcattatgtaacttatgattaatctaaagttaggctctattgtgctcagtttacgtgaaaatcgacacctactcattttatccttttctattccattgtattgag-tatccttcgatctctctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGCTGGTCGGGCGATGACTTTGAAGTTTACAAAGAAGGCTTGATGCACCTAG
                                                                                       ||   | |  | |    | |  ||  |  ||   |||    |  ||  |||   |||||||||||||| | | || |   |||  || ||| | ||||||||| |||||||||| || ||||| |||||||| || |||||||| || || |||||    |||||||||||||||||||| |||||||||  ||| ||  
---------------------------------------------------------------------------------------tattatgtgctttaagaaatacacaagttaaaacacattggccaatcctatgtctttctattccattgcagtaaggtcctcttgaatttctgtattgcagCGGTTGCTTGGGATGCAGATGGCAACATTCCGACTGTACCTTGTCTGCCGGTGGTCCTCTGATGACTTTGAAGTTTACAAGGAAGGCTTGGCGCAACTGC

upper sequence: GRMZM2G467086_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os12g01430.1 (Oryza sativa), 3'ss of exon 8
gtacagtattactgtgtgatggctgttatatgtttgattttgaagatatgccataattcattatgtaacttatgattaat-ctaaagttaggctctattgtgctcagtttacgtgaaaatcgacacctactcattttatccttttctattccattgtattgag-tatccttcgatctctctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGCTGGTCGGGCGATGACTTTGAAGTTTACAAAGAAGGCTTGATGCACCTAG
                                                                ||||| | |   |  |     | |||   | || | |    | |  ||  |  ||   |||    |  ||  |||   |||||||||||||| ||| || |   |||  || ||| | ||||||||| |||||||||| || ||||| |||||||| || |||||||| || || |||||    |||||||| ||||||||||| |||||||||  ||| ||  
----------------------------------------------------------------gtaacatctttgtggtgtcgtaattattatgtactttaagaaatacacaagttaaaacacattggccaatcctatgtctttctattccattgcattaaggtcctctttaatttctgtattgcagCGGTTGCTTGGGATGCAGATGGCAACATTCCGACTGTACCTTGTCTGCCGGTGGTCCTCTGATGACTTCGAAGTTTACAAGGAAGGCTTGGCGCAACTGC

upper sequence: GRMZM2G467086_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os12g01430.2 (Oryza sativa), 3'ss of exon 6
gtacagtattactgtgtgatggctgttatatgtttgattttgaagatatgccataattcattatgtaacttatgattaatctaaagttaggctctattgtgctcagtttacgtgaaaatcgacacctactcattttatccttttctattccattgtattgag-tatccttcgatctctctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGCTGGTCGGGCGATGACTTTGAAGTTTACAAAGAAGGCTTGATGCACCTAG
                                                                                       ||   | || | |    | |  ||  |  ||   |||    |  ||  |||   |||||||||||||| ||| || |   |||  || ||| | ||||||||| |||||||||| || ||||| |||||||| || |||||||| || || |||||    |||||||| ||||||||||| |||||||||  ||| ||  
---------------------------------------------------------------------------------------tattatgtactttaagaaatacacaagttaaaacacattggccaatcctatgtctttctattccattgcattaaggtcctctttaatttctgtattgcagCGGTTGCTTGGGATGCAGATGGCAACATTCCGACTGTACCTTGTCTGCCGGTGGTCCTCTGATGACTTCGAAGTTTACAAGGAAGGCTTGGCGCAACTGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|440735|gb|T14756.1|T14756
EST:     TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
EST: gi|60347115|gb|DN214088.1|DN214088
EST:     TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
EST: gi|67015514|gb|CO444263.1|CO444263
EST:     TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
EST: gi|71441332|gb|DR822382.1|DR822382
EST:     TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
EST: gi|37397689|gb|CF636152.1|CF636152
EST:     TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
EST: gi|40337158|gb|CK371228.1|CK371228
EST:     TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
EST: gi|5499042|gb|AI854909.1|AI854909
EST:     TAGTTGGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGGG
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGG
EST: gi|30088302|gb|CB886507.1|CB886507
EST:     TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
EST: gi|71434423|gb|DR815473.1|DR815473
EST:     TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
EST: gi|71441331|gb|DR822381.1|DR822381
EST:     TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
EST: gi|71447892|gb|DR828942.1|DR828942
EST:     TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
EST: gi|37387625|gb|CF631010.1|CF631010
EST:     TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
EST: gi|5439234|gb|AI820155.1|AI820155
EST:     TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
EST: gi|21828674|gb|BQ703358.1|BQ703358
EST:     TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
EST: gi|5895917|gb|AW037163.1|AW037163
EST:     TAGTTTGTGAGGAAGGAAAACCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
EST: gi|71322698|gb|DR798027.1|DR798027
EST:     TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
EST: gi|78544743|gb|DV622241.1|DV622241
EST:     TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
EST: gi|211520202|gb|FL010171.1|FL010171
EST:     TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGGGATAACAA-TGGCGACATTCCGTCTATACCTTGTGTG
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGGATA-CAAATGGCGACATTCCGTCTATACCTTGTGTG
EST: gi|67020213|gb|CO448962.1|CO448962
EST:     TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
EST: gi|101383868|gb|EB813989.1|EB813989
EST:     TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGGCGC
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
EST: gi|20301587|gb|BQ164530.1|BQ164530
EST:     TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
EST: gi|60399755|gb|DN232565.1|DN232565
EST:     TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
EST: gi|40335855|gb|CK369925.1|CK369925
EST:     GAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
genomic: GAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
EST: gi|148969444|gb|EE020248.2|EE020248
EST:     TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
EST: gi|4225461|gb|AI395914.1|AI395914
EST:     TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
EST: gi|78026443|gb|DV494830.1|DV494830
EST:     TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
EST: gi|5398724|gb|AI812189.1|AI812189
EST:     TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGG-ATAC
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGGATAC
EST: gi|5108236|gb|AI739949.1|AI739949
EST:     TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
EST: gi|149015123|gb|EE044887.2|EE044887
EST:     TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
EST: gi|87156128|gb|DY400917.1|DY400917
EST:     TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGT
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGT
EST: gi|37381233|gb|CF627490.1|CF627490
EST:     TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
EST: gi|89761969|gb|DY689774.1|DY689774
EST:     TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
EST: gi|5597120|gb|AI891323.1|AI891323
EST:     TAGTTTGTGAGGAAGGAAAACCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
EST: gi|78119879|gb|DV538263.1|DV538263
EST:     TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
EST: gi|45568458|gb|CK986074.1|CK986074
EST:     TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTG                         CGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC
genomic: TAGTTTGTGAGGAAGGAAAGCCCCTTTCGCCAGAAGCAGCGCAGACTCTGgtacagtatt ... tctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttatccttttctattccattgtattgagtatccttcgatctctctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGCTGGTCGGGCGATGACTTTGAAGTTTACAAAGAAGGCTTGATGCACCTAG
                                 tccttcgatctctctc  CT-rich tract
         ttttctatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacagtattactgtgtgatggctgttatatgtttgattttgaagatatgccataattcattatgtaacttatgattaatctaaagttaggctctattgtgctcagtttacgtgaaaatcgacacctactcattttatccttttctattccattgtattgagtatccttcgatctctctcttgcagCGGCTGCTTGGGATACAAATGGCGACATTCCGTCTATACCTTGTGTGTCGCTGGTCGGGCGATGACTTTGAAGTTTACAAAGAAGGCTTGATGCACCTAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG