1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atacattttgttgtttatcttgacattttcttttctattttttgttgaaatgatttcttgttttctcctgtataacttcatgcttcattgttctgtgcagCTTTTTTACAAATACACTTATTCTTCCTATAGTCAACGGACCAACTGAAGGCCTTATGCTGATCTACTTGTGCCATTTTTTCACCTTTTTCACAG
species | Zea mays |
transcript | GRMZM2G466281_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGGTTTTGGTTCATTTCAGCTGTCCCATTTTACTTCGCAACCTGGGAACA CTTTTTTACAAATACACTTATTCTTCCTATAGTCAACGGACCAACTGAAGGEST: gi|76933447|gb|DV173462.1|DV173462
genomic: TGGTTTTGGTTCATTTCAGCTGTCCCATTTTACTTCGCAACCTGGGAACAgtgagttctt ... ttctgtgcagCTTTTTTACAAATACACTTATTCTTCCTATAGTCAACGGACCAACTGAAGG
EST: TGGTTTTGGTTCATTTCAGCTGTCCCATTTTACTTCGCAACCTGGGAACA CTTTTTTACAAATACACTTATTCTTCCTATAGTCAACGGACCAACTGAAGGEST: gi|76284393|gb|DV023961.1|DV023961
genomic: TGGTTTTGGTTCATTTCAGCTGTCCCATTTTACTTCGCAACCTGGGAACAgtgagttctt ... ttctgtgcagCTTTTTTACAAATACACTTATTCTTCCTATAGTCAACGGACCAACTGAAGG
EST: TGGTTTTGGTTCATTTCAGCTGTCCCATTTTACTTCGCAACCTGGGAACA CTTTTTTACAAATACACTTATTCTTCCTATAGTCAACGGACCAACTGAAGGEST: gi|148930548|gb|EE285169.2|EE285169
genomic: TGGTTTTGGTTCATTTCAGCTGTCCCATTTTACTTCGCAACCTGGGAACAgtgagttctt ... ttctgtgcagCTTTTTTACAAATACACTTATTCTTCCTATAGTCAACGGACCAACTGAAGG
EST: TGGTTTTGGTTCATTTCAGCTGTCCCATTTTACTTCGCAACCTGGGAACA CTTTTTTACAAATACACTTATTCTTCCTATAGTCAACGGACCAACTGAAGGEST: gi|148948015|gb|EC893516.2|EC893516
genomic: TGGTTTTGGTTCATTTCAGCTGTCCCATTTTACTTCGCAACCTGGGAACAgtgagttctt ... ttctgtgcagCTTTTTTACAAATACACTTATTCTTCCTATAGTCAACGGACCAACTGAAGG
EST: TGGTTTTGGTTCATTTCAGCTGTCCCATTTTACTTCGCAACCTGGGAACA CTTTTTTACAAATACACTTATTCTTCCTATAGTCAACGGACCAACTGAAGGEST: gi|149085392|gb|EE174899.2|EE174899
genomic: TGGTTTTGGTTCATTTCAGCTGTCCCATTTTACTTCGCAACCTGGGAACAgtgagttctt ... ttctgtgcagCTTTTTTACAAATACACTTATTCTTCCTATAGTCAACGGACCAACTGAAGG
EST: TGGTTTTGGTTCATTTCAGCTGTCCCATTTTACTTCGCAACCTGGGAACA CTTTTTTACAAATACACTTATTCTTCCTATAGTCAACGGACCAACTGAAGG
genomic: TGGTTTTGGTTCATTTCAGCTGTCCCATTTTACTTCGCAACCTGGGAACAgtgagttctt ... ttctgtgcagCTTTTTTACAAATACACTTATTCTTCCTATAGTCAACGGACCAACTGAAGG
tgaaatgatttcttgttttctcctgtataacttcatgcttcattgttctgtgcagCTTTTTTACAAATACACTTATTCTTCCTATAGTCAACGGACCAACTGAAGGCCTTATGCTGATCTACTTGTGCCATTTTTTCACCTTTTTCACAG
gtataac putative branch site (score: 198)
ttgttct putative PPT
tataactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atacattttgttgtttatcttgacattttcttttctattttttgttgaaatgatttcttgttttctcctgtataacttcatgcttcattgttctgtgcagCTTTTTTACAAATACACTTATTCTTCCTATAGTCAACGGACCAACTGAAGGCCTTATGCTGATCTACTTGTGCCATTTTTTCACCTTTTTCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
-tacattt
- - - tttgttg
- - - - tgttgtt
- - - - - - - - - - tgacatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcatgc