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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgttgtatttgggcttgagcatggtactggttgtacaaccagaaggtttcattgtcatttctgtatattgagctaatagctttcacttacacttttcagATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCTCCTCCGTTACAACCCTCTCCGATGTTGAGGGGCTATGTGTTTCTTTTGCTGGGA

Basic information

species Zea mays
transcript GRMZM2G458549_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G458549_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os03g61710.1 (Oryza sativa), 3'ss of exon 7
ctgttgtatttgggcttgagcatggtactggttgtacaaccagaaggtttcattgtcatttctgtatattgagctaatagctttcacttacactttt-cagATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCTCCTCCGTTACAACCCTCTCCGATGTTGAGGGGCTATGTGTTTCTTTTGCTGGGA
   ||| |  |||  ||||||  | | ||   |   |||| |     |   ||| || |||   | | || |  |||||    |   || || |||| ||||||||||||||||||||||| |||||||| |  ||||||||| ||||||| ||||| |||||||| |||||||||||| ||||||| ||||||||||| |
actttggaactggatttgagctggctgctatatcaccaacaaagtaatgatatt-tctttttcatttgttcatttaatattgctgttttgcatttttgcagATTGTTCTTGCCATCAAACTAGGGATGGAAACAAAAAAGGCTGTCTCCTCTGTTACCACCCTCTCTGATGTTGAGGGGTTATGTGTCTCTTTTGCTGGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78111011|gb|DV529408.1|DV529408
EST:     CAGCTGCAACAAATTATAATAACCGTGTTGTGGAGTGTCGCTTAGCAGCG                         ATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCTCCTCC
genomic: CAGCTGCAACAAATTATAATAACCGTGTTGTGGAGTGTCGCTTAGCAGCGgtaaatgact ... cacttttcagATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCTCCTCC
EST: gi|32833835|gb|CD973513.1|CD973513
EST:     CAGCTGCAACAAATTATAATACCCGTGTTGTGGAGTGTCGCTTAGCAGCG                         ATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCTCCTCC
genomic: CAGCTGCAACAAATTATAATAACCGTGTTGTGGAGTGTCGCTTAGCAGCGgtaaatgact ... cacttttcagATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCTCCTCC
EST: gi|17921536|gb|BM259187.1|BM259187
EST:     CAGCTGCAACAAATTATAATAACCGTGTTGTGGAGTGTCGCTTAGCAGCG                         ATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCTCCTCC
genomic: CAGCTGCAACAAATTATAATAACCGTGTTGTGGAGTGTCGCTTAGCAGCGgtaaatgact ... cacttttcagATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCTCCTCC
EST: gi|211541591|gb|FL022794.1|FL022794
EST:     AATAACCGCGTTGTGGAGTGTCGCTTAGCAGCG                         ATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAAGCTATCTCCTCC
genomic: AATAACCGTGTTGTGGAGTGTCGCTTAGCAGCGgtaaatgact ... cacttttcagATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCTCCTCC
EST: gi|17921866|gb|BM259517.1|BM259517
EST:     CAGCTGCAACAAATTATAATAACCGTGTTGTGGAGTGTCGCTTAGCAGCG                         ATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCTCCTCC
genomic: CAGCTGCAACAAATTATAATAACCGTGTTGTGGAGTGTCGCTTAGCAGCGgtaaatgact ... cacttttcagATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCTCCTCC
EST: gi|32943061|gb|CF047880.1|CF047880
EST:     CAGCTGCAACAAATTATAATAACCGTGTTGTGGAGTGTCGCTTAGCAGCG                         ATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCTCCTCC
genomic: CAGCTGCAACAAATTATAATAACCGTGTTGTGGAGTGTCGCTTAGCAGCGgtaaatgact ... cacttttcagATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCTCCTCC
EST: gi|211541592|gb|FL022795.1|FL022795
EST:     TAATAACCGCGTTGTGGAGTGTCGCTTAGCAGCG                         ATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAAGCTATCTCCTCC
genomic: TAATAACCGTGTTGTGGAGTGTCGCTTAGCAGCGgtaaatgact ... cacttttcagATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCTCCTCC
EST: gi|32835728|gb|CD975406.1|CD975406
EST:     CAGCTGCAACAAATTATAATAACCGTGTTGTGGAGTGTCGCTTAGCAGCG                         ATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCTCCTCC
genomic: CAGCTGCAACAAATTATAATAACCGTGTTGTGGAGTGTCGCTTAGCAGCGgtaaatgact ... cacttttcagATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCTCCTCC
EST: gi|211139371|gb|FL028742.1|FL028742
EST:     CAGCTGCAACAANTTATAATAACCGCGTTGTGGAGTGTCGCTTANCAGCG                         ATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAAGCTATCTCCTCC
genomic: CAGCTGCAACAAATTATAATAACCGTGTTGTGGAGTGTCGCTTAGCAGCGgtaaatgact ... cacttttcagATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCTCCTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtttcattgtcatttctgtatattgagctaatagctttcacttacacttttcagATTGTTCTTGCCATCAAACTTGGGATGGATAGGAAAAAGGCTATCTCCTCCGTTACAACCCTCTCCGATGTTGAGGGGCTATGTGTTTCTTTTGCTGGGA
                                       cacttac  putative branch site (score: 2)
                                             cacttttc  CT-rich tract
                 tgtatatt  TA-rich tract