1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttacaatgtgtatattattcaaacataccatagtttgtttttatccgctctggttaatttatctcagagttgacatgtatttttctttattataacccagGTTAACAAATGTTGATGAGGAAGGCCATCTATATGGGGTTTCTGGAGGTTCTGGGGGCTATGCAGAAACAGTCTTTCGCTATGGAGCAAATGTAATTTAC
species | Zea mays |
transcript | GRMZM2G456690_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAAATCTA-CGANTTCAAGACAGTAGAGGAATCCTTCATTGGACAGGATT GTTACCAAATGTTGATGAGGAAG
genomic: CAAATCTATCGATTTCAAGACAGTAGAGGAATC-TTCATTGGACAG-ATTgtaaggccat ... tataacccagGTTAACAAATGTTGATGAGGAAG
cgctctggttaatttatctcagagttgacatgtatttttctttattataacccagGTTAACAAATGTTGATGAGGAAGGCCATCTATATGGGGTTTCTGGAGGTTCTGGGGGCTATGCAGAAACAGTCTTTCGCTATGGAGCAAATGTAATTTAC
ttataac putative branch site (score: 5)
tatttttctttatt CT-rich tract
acatgtatttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacaatgtgtatattattcaaacataccatagtttgtttttatccgctctggttaatttatctcagagttgacatgtatttttctttattataacccagGTTAACAAATGTTGATGAGGAAGGCCATCTATATGGGGTTTCTGGAGGTTCTGGGGGCTATGCAGAAACAGTCTTTCGCTATGGAGCAAATGTAATTTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- -caatgtg
- - - - - - - - - - - -catacca
- - - - - - - - - - - - - - - - - -tgttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacatg