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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcgtagcttttgtacaactagattggtagctgttgcatctatgatttagtgtatactttacataatgcttattttgatagggctgatattgtgtttccaaatttgcattagcgtttgcttacagctaacatgcatattaactttaaattaatgctttgcaatacacagGAAGCTGAAGAGCGTAAGAATGTCATGAAGGATCCAAAATCAGTTGTGCCGGCAGCCTTTGTCTCATTTCGCTCCCGATGGGGTGCAGCAGTCTGTGCTC

Basic information

species Zea mays
transcript GRMZM2G456000_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G456000_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os05g51630.2 (Oryza sativa), 3'ss of exon 6
gtaagtcgtagcttttgtacaactagattggtagctgttgcatctatgatttagtgtatactttacataatgcttattttgatagggctgatattgtgtttccaaatttgcattagcgtttgcttacagctaacatgcatattaactttaaattaatgctttgcaatacacagGAAGCTGAAGAGCGTAAGAATGTCATGAAGGATCCAAAATCAGTTGTGCCGGCAGCCTTTGTCTCATTTCGCTCCCGATGGGGTGCAGCAGTCTGTGCTC
                                                                    | |  |||| |   || |  | | |   |    ||   |  |  ||    |||| ||||||||||||  || || |||  |||||| |||  |  ||| |  ||||||||||| |||||| | ||  |||||||||||||  | |||| ||| || ||||||||||| |||||||| || || ||||| || || || |||||||
--------------------------------------------------------------------agta-ttatgtc--taagcatcacacattcacaccttgtgggagttta-atttgtttacagctaacagtcagat-aacaataaattcatgtgtaacaacatgcagGAAGCTGATGAGCGTCAAAAGATCATGAAGGATCCCCAGTCAGCTGTTCCAGCAGCCTTTGTTTCATTTCGTTCACGGTGGGGGGCTGCTGTTTGTGCTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgcttacagctaacatgcatattaactttaaattaatgctttgcaatacacagGAAGCTGAAGAGCGTAAGAATGTCATGAAGGATCCAAAATCAGTTGTGCCGGCAGCCTTTGTCTCATTTCGCTCCCGATGGGGTGCAGCAGTCTGTGCTC
            taacatgcatattaac  TA-rich tract