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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcagataaacacctgttttcacaatgaactagatgaaaaaaagttcctgacatgagctactatatcatgcagCTCTTTTGTGCAAGATCGCAGCACTGCGGTCGTTTTCGTTGGAGCGATTGCAGTACTTCAGAGAGAGAGAATCTGGGATGAGCTCTCTGGCATACTTCCT

Basic information

species Zea mays
transcript GRMZM2G455476_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G455476_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os04g11820.1 (Oryza sativa), 3'ss of exon 11
gtaagttcaga----taaacacctgttttcacaatgaactagatgaaaaaaagttcctgacatgagctactatatcatgcagCTCTTTTGTGCAAGATCGCAGCACTGCGGTCGTTTTCGTTGGAGCGATTGCAGTACTTCAGAGAGAGAGAATCTGGGATGAGCTCTCTGGCATACTTCCT
|||||||||||    | |     |  | |||           |    |  |  |  ||||||| |  |||||  || ||||||||| ||||||||||| ||||||||  ||||||||||  | ||  ||||||| ||||| || || ||||| || |||||||||||  |||||||||| ||
gtaagttcagagtattcagattatactgtcattgcagtacgaacttgattatttgactgacataaattactacttc-tgcagCTCTGTTGTGCAAGATTGCAGCACTAAGGTCGTTTTCACTTGAAAGATTGCAATACTTGAGGGAAAGAGAGTCAGGGATGAGCTCATTGGCATACTTTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76013068|gb|DT940238.1|DT940238
EST:     TGACAAAACATTCGGGATGCCTGGCTACATATACACTATAATTGCAGTCT                         CTCTTTTGTGCAAGATCGCAGCACTGCGGTCGTTTTCGTTGGAGCGATTGC
genomic: TGACAAAACATTCGGGATGCCTGGCTACATATACACTATAATTGCAGTCTgtaagttcag ... tatcatgcagCTCTTTTGTGCAAGATCGCAGCACTGCGGTCGTTTTCGTTGGAGCGATTGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcacaatgaactagatgaaaaaaagttcctgacatgagctactatatcatgcagCTCTTTTGTGCAAGATCGCAGCACTGCGGTCGTTTTCGTTGGAGCGATTGCAGTACTTCAGAGAGAGAGAATCTGGGATGAGCTCTCTGGCATACTTCCT
                           tcctgac  putative branch site (score: 2)
               atgaaaaaaa  TA-rich tract