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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatactgattcattttgatgttatttgtggttctataaaattgtcccaggctcacattttcaaaattgtattaaccatttcagGTGTTAAGATCTGGTTATTGGCAATAATTTACTTCATATCTGGTGTTCCTGGTGCATATGTTTTGTGGTATCGTCCTCTGTATAATGCAATGAG

Basic information

species Zea mays
transcript GRMZM2G448715_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G448715_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os07g37740.1 (Oryza sativa), 3'ss of exon 7
gtatactgat--tcattttgatgttatttgtg-gttctataaaattgtcccaggctcacatt-ttcaaaattgtattaaccattt-cagGTGTTAAGATCTGGTTATTGGCAATAATTTACTTCATATCTGGTGTTCCTGGTGCATATGTTTTGTGGTATCGTCCTCTGTATAATGCAATGAG
||||||| ||     || ||  |||  ||||   |  |    | || |   |||||   ||  || || | ||   |  |||||| |||| || ||||| |||||  ||||||| || |||||||| ||||| |||||||||||||||||||| |||||||| |||||||||||||| |||||
gtatactcatgacacttctggcgttgcttgtacatattgaccagttctttaaggctgtaatcctttaataatgctatgtccattttcagGCGTGAAGATATGGTTGCTGGCAATCATCTACTTCATCTCTGGGGTTCCTGGTGCATATGTTTTATGGTATCGACCTCTGTATAATGCTATGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91048315|gb|EB158733.1|EB158733
EST:     CCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGATCAAGGGGGAAG                         GTGTTAAGATCTGGTTATTGGCAATAATTTACTTCATATCTGGTGTTCCTG
genomic: CCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGATCAAGGGGGAAGgtatactgat ... accatttcagGTGTTAAGATCTGGTTATTGGCAATAATTTACTTCATATCTGGTGTTCCTG
EST: gi|76931490|gb|DV172743.1|DV172743
EST:     CCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGATCAAGGGGGAAG                         GTGTTAAGATCTGGTTATTGGCAATAATTTACTTCATATCTGGTGTTCCTG
genomic: CCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGATCAAGGGGGAAGgtatactgat ... accatttcagGTGTTAAGATCTGGTTATTGGCAATAATTTACTTCATATCTGGTGTTCCTG
EST: gi|89251197|gb|DY622983.1|DY622983
EST:     CCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGATCAAGGGGGAAG                         GTGTTAAGATCTGGTTATTGGCAATAATTTACTTCATATCTGGTGGTCCTG
genomic: CCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGATCAAGGGGGAAGgtatactgat ... accatttcagGTGTTAAGATCTGGTTATTGGCAATAATTTACTTCATATCTGGTGTTCCTG
EST: gi|37621886|gb|CF674939.1|CF674939
EST:     CCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGATCA-GGGGGAAG                         GTGTTAAGATCTGGTTATTGGCAATA
genomic: CCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGATCAAGGGGGAAGgtatactgat ... accatttcagGTGTTAAGATCTGGTTATTGGCAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttctataaaattgtcccaggctcacattttcaaaattgtattaaccatttcagGTGTTAAGATCTGGTTATTGGCAATAATTTACTTCATATCTGGTGTTCCTGGTGCATATGTTTTGTGGTATCGTCCTCTGTATAATGCAATGAG
                                        tattaac  putative branch site (score: 1)
                                              ccatttc  CT-rich tract
                         acattttcaaaattgt  TA-rich tract