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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgaactacatataattttgctgtcttcctttttttagaagcaatctttgcttcctaactcagtaacttttgattccagTGTACTCTGCCAACATACTCAAGCAGAATTGCAGTTAGTGCCGTTGACAACATAATTATGGTTCACCAAATAGATGCAAAAGTAGTCATGCTTTACGATG

Basic information

species Zea mays
transcript GRMZM2G444692_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G444692_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os10g26140.2 (Oryza sativa), 3'ss of exon 8
----------gtttgaactacatataattttgctgtct-------tccttttttta----gaagcaatctttgcttcctaactcagtaacttttgattccagTGTACTCTGCCAACATACTCAAGCAGAATTGCAGTTAGTGCCGTTGACAACATAATTATGGTTCACCAAATAGATGCAAAAGTAGTCATGCTTTACGATG
              |||||| || || ||| ||  |||       | |||||| |      ||| |||| |     ||||||||| | |||| | ||  ||| ||||||||||||| || ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||||| || || ||||
tagccatcaaacaggaacta-atctattttggccatctagcatccttctttttctgcaacaaagtaatcctaatcccctaactca-tgacttgtcatctcagGGTACTCTGCCAACTTATTCAAGTAGAATTGCAGTTAGTGCGGTTGACAACATAATCATGGTTCACCAAATAGATGCAAAGGTTGTCATACTATATGATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22546357|gb|BU098668.1|BU098668
EST:     GTATGTCATTGAATCTATATCGCTTTTACCGTGATGCTGTTGTACAACAG                         TGTACTCTGCCAACATACTCAAGCAGAATTGCAGTTAGTGCCGTTGACAAC
genomic: GTATGTCATTGAATCTATATCGCTTTTACCGTGATGCTGTTGTACAACAGgtttgaacta ... ttgattccagTGTACTCTGCCAACATACTCAAGCAGAATTGCAGTTAGTGCCGTTGACAAC
EST: gi|22472312|gb|BU036792.1|BU036792
EST:     GTATGTCATTGAATCTATATCGCTTTTACCGTGATGCTGTTGTACAACAG                         TGTACTCTGCCAACATACTCAAGCAGAATTGCAGTTAGTGCCGTTGACAAC
genomic: GTATGTCATTGAATCTATATCGCTTTTACCGTGATGCTGTTGTACAACAGgtttgaacta ... ttgattccagTGTACTCTGCCAACATACTCAAGCAGAATTGCAGTTAGTGCCGTTGACAAC
EST: gi|26558469|gb|CA830704.1|CA830704
EST:     GTATGTCATTGAATCTATATCGCTTTTACCGTGATGCTGTTGTACAACAG                         TGTACTCTGCCAACATACTCAAGCAGAATTGCAGTTAGTGCCGTTGACAAC
genomic: GTATGTCATTGAATCTATATCGCTTTTACCGTGATGCTGTTGTACAACAGgtttgaacta ... ttgattccagTGTACTCTGCCAACATACTCAAGCAGAATTGCAGTTAGTGCCGTTGACAAC
EST: gi|87155752|gb|DY400541.1|DY400541
EST:     GTATGTCATTGAATCTATATCGCTTTTACCGTGATGCTGTTGTACAACAG                         TGTACTCTGCCAACATACTCAAGCAGAATTGCAGTTAGTGCCGTTGACAAC
genomic: GTATGTCATTGAATCTATATCGCTTTTACCGTGATGCTGTTGTACAACAGgtttgaacta ... ttgattccagTGTACTCTGCCAACATACTCAAGCAGAATTGCAGTTAGTGCCGTTGACAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcctttttttagaagcaatctttgcttcctaactcagtaacttttgattccagTGTACTCTGCCAACATACTCAAGCAGAATTGCAGTTAGTGCCGTTGACAACATAATTATGGTTCACCAAATAGATGCAAAAGTAGTCATGCTTTACGATG
                                          ctttt  CT-rich tract
     tttttttagaa  TA-rich tract