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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcataactgtagattcacttaaattgtttccagatttgtttgaattatagcttttcttagtggcaaattgatagccaatcaatcatgtatttgtgtaatttgtttgtaagttactctttacttgaatcttcttcagGAAGTTAGAAGACGCGGTCTCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACATCCCT

Basic information

species Zea mays
transcript GRMZM2G443985_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G443985_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os06g05860.1 (Oryza sativa), 3'ss of exon 7
gtaagcataactgtagattcacttaaattgtttccagatttgtttgaattatagcttttcttagtggcaaattgat-agcca-atcaatcatgtatttgtgtaatttgtttgtaagttactctttacttgaatcttctt--cagGAAGTTAGAAGACGCGGTCTCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACATCCCT
                                            | ||  | |   | |  || | | || | ||| | |   ||    | | | |||  ||||  ||||||||| |    || |  ||| |   | ||  |||||  |||||||||| |||||||| ||| |||||||||||||||||||||| ||||| ||||| || || 
--------------------------------------------ttaaccaaatggtataataattgaaagtcgatcaactgtattcccccttttttttagtaacatgtttgtaaatgtgactatgattggactctttttacagGAGATTAGAAGACGTGGTCTCAAGGTTGCTGTTGCTGGCATTCCAAAGACGATTGATAATGATATACCA

upper sequence: GRMZM2G443985_T02 (Zea mays), 3'ss of exon 7
lower sequence: PP1S131_40V6.1 (Physcomitrella patens), 3'ss of exon 7
gtaagcataactgtagattcacttaaattgtttccagatttgtttgaattatagcttttcttagtggcaaattgatagccaatcaatcatgtatttgtgtaatttgtttgtaagttactctttacttgaatcttcttcagGAAGTTAGAAGACGCGGTCTCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACATCCCT
                                   | |   || |    | ||    | || | |   |  ||   |   |||  ||  |  | |||  ||       |   | | | | | |  |    |   |  ||||||   | |||| | ||||| || ||  ||||||| |||||||| || ||||||||||||||||||  |
----------------------------------taaagacgtct----tgtaaagatcctaattaagaggttagca-taaattgattcttgaattgattacccccaataacattcagtatatggtctt-ttacccgcagGAATGCAAAAGAAGGGGTCTGAAGGTGGCTGTTGCAGGCATTCCCAAAACTATTGACAATGACATCGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32938375|gb|CF043194.1|CF043194
EST:     TACTCAAAGGGGTGCTGGAGTGATTTTCGAA                         GAAGTTAGAAGACGCGGTCTCAAAGTTTCTGTTGCTGGCATTCCAAAGACT
genomic: TACTCAAAGGGGTGCTGGAGTGATTTTCGAAgtaagcataa ... tcttcttcagGAAGTTAGAAGACGCGGTCTCAAAGTTTCTGTTGCTGGCATTCCAAAGACT
EST: gi|211132978|gb|FL170883.1|FL170883
EST:     ATGTAATTGGTGGAGATGGTACTCAAAGGGGTGCTGGAGTGATATTCGAA                         GAAGTTWGAAGACGCGGTCTCAAAGTTTCTGTTGCTGGCATTCC
genomic: ATGTAATTGGTGGAGATGGTACTCAAAGGGGTGCTGGAGTGATTTTCGAAgtaagcataa ... tcttcttcagGAAGTTAGAAGACGCGGTCTCAAAGTTTCTGTTGCTGGCATTCC
EST: gi|32938968|gb|CF043787.1|CF043787
EST:     ACTCAAAGGGGTGCTGGAGTGATTTTCGAA                         GAAGTTAGAAGACGCGGTCTCAAAGTTTCTGTTGCTGGCATTCCAAAGACT
genomic: ACTCAAAGGGGTGCTGGAGTGATTTTCGAAgtaagcataa ... tcttcttcagGAAGTTAGAAGACGCGGTCTCAAAGTTTCTGTTGCTGGCATTCCAAAGACT
EST: gi|148972520|gb|EE023481.2|EE023481
EST:     TGTAATTGGTGGAGATGGTACTCAAAGGGGTGCTGGAGTGATTTTTCGA-                         GAAGTTAGAAGACGCGGTCTCAAAGTTTCTG
genomic: TGTAATTGGTGGAGATGGTACTCAAAGGGGTGCTGGAGTGATTTT-CGAAgtaagcataa ... tcttcttcagGAAGTTAGAAGACGCGGTCTCAAAGTTTCTG
EST: gi|32939806|gb|CF044625.1|CF044625
EST:     ACTCAAAGGGGTGCTGGAGTGATTTTCGAA                         GAAGTTAGAAGACGCGGTCTCAAAGTTTCTGTTGCTGGCATTCCAAAGACT
genomic: ACTCAAAGGGGTGCTGGAGTGATTTTCGAAgtaagcataa ... tcttcttcagGAAGTTAGAAGACGCGGTCTCAAAGTTTCTGTTGCTGGCATTCCAAAGACT
EST: gi|32939493|gb|CF044312.1|CF044312
EST:     ACTCAAAGGGGTGCTGGAGTGATTTTCGAA                         GAAGTTAGAAGACGCGGTCTCAAAGTTTCTGTTGCTGGCATTCCAAAGACT
genomic: ACTCAAAGGGGTGCTGGAGTGATTTTCGAAgtaagcataa ... tcttcttcagGAAGTTAGAAGACGCGGTCTCAAAGTTTCTGTTGCTGGCATTCCAAAGACT
EST: gi|13557855|gb|BG549211.1|BG549211
EST:     ATGTAATTGGTGGAGATGGTACTCAAAGGGGTGCTGGAGTGATTTTCGAA                         GAAGTTAGAAGACGCGGTCTCAAAGTTTCTGTTGCTGGCATTCCAAAGACT
genomic: ATGTAATTGGTGGAGATGGTACTCAAAGGGGTGCTGGAGTGATTTTCGAAgtaagcataa ... tcttcttcagGAAGTTAGAAGACGCGGTCTCAAAGTTTCTGTTGCTGGCATTCCAAAGACT
EST: gi|76921243|gb|DV168509.1|DV168509
EST:     ATGTAATTGGTGGAGATGGTACTCAAAGGGGTGCTGGAGTGATTTTCGAA                         GAAGTTAGAAGACGCGGTCTCAAAGTTTCTGTTGCTGGCATTCCAAAGACT
genomic: ATGTAATTGGTGGAGATGGTACTCAAAGGGGTGCTGGAGTGATTTTCGAAgtaagcataa ... tcttcttcagGAAGTTAGAAGACGCGGTCTCAAAGTTTCTGTTGCTGGCATTCCAAAGACT
EST: gi|211132969|gb|FL170874.1|FL170874
EST:     ATGTAATTGGTGGAGATGGTACTCAAAGGGGTGCTGGAGTGATATTCGAA                         GAAGTTAGAAGACGCGGTCTCAAAGTTTCTGTTGCTGGCATTCCAAAGACT
genomic: ATGTAATTGGTGGAGATGGTACTCAAAGGGGTGCTGGAGTGATTTTCGAAgtaagcataa ... tcttcttcagGAAGTTAGAAGACGCGGTCTCAAAGTTTCTGTTGCTGGCATTCCAAAGACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcatgtatttgtgtaatttgtttgtaagttactctttacttgaatcttcttcagGAAGTTAGAAGACGCGGTCTCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACATCCCT
                                             tcttcttc  CT-rich tract
      tatttgtgtaattt  TA-rich tract