1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgtgctctgtccacattgaatgctctggttatttggaagttggatctctgctcacctgctgccacctgttttgcagGATGCTTGGAACAAATTCACTTCGGAGGAGCGCTAG
species | Zea mays |
transcript | GRMZM2G438895_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTACGATCAGACAGAAATACATATGTGAGAAGGTTTTTGATCTTCTTAAG GATGCTTGGAACAAATTCACTTCGGAGGAGCGCTAGEST: gi|113814220|gb|DW931581.1|DW931581
genomic: CTACGATCAGACAGAAATACATATGTGAGAAGGTTTTTGATCTTCTTAAGgtatgtgctc ... tgttttgcagGATGCTTGGAACAAATTCACTTCGGAGGAGCGCTAG
EST: CTACGATCAGACAGAAATACATATGTGAGAAGGTTTTTGATCTTCTTAAG GATGCTTGGAACAAATTCACTTCGGAGGAGCGCTAG
genomic: CTACGATCAGACAGAAATACATATGTGAGAAGGTTTTTGATCTTCTTAAGgtatgtgctc ... tgttttgcagGATGCTTGGAACAAATTCACTTCGGAGGAGCGCTAG
gctctggttatttggaagttggatctctgctcacctgctgccacctgttttgcagGATGCTTGGAACAAATTCACTTCGGAGGAGCGCTAG
tgctcac putative branch site (score: 37)
cctgtttt putative PPT
ttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgctctgtccacattgaatgctctggttatttggaagttggatctctgctcacctgctgccacctgttttgcagGATGCTTGGAACAAATTCACTTCGGAGGAGCGCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG