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gtaatgttgaccttcccgatcgcatcttgttctcattgttttgaccgagttccatgcagctgctgatgactttcctatttttgcagGCGGAATTGCATAATGTGAGAAGCCAATTGCTAAGTGATTTCACTCCCGATGACATGTGTCCTACAAGCACTCAGTTCTTTGAAGTGCATGCTGATAACC
species | Zea mays |
transcript | GRMZM2G431573_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAGAATGCATAGTCTCCACAATCATGAACAACATCGCAAATATGCTGGAT GCGGAATTGCATAATGTGAGAAGCCAATTGCTAAGTGATTTCACTCCCGATEST: gi|87154279|gb|DY399068.1|DY399068
genomic: GAGAATGCATAGTCTCCACAATCATGAACAACATCGCAAATATGCTGGATgtaatgttga ... atttttgcagGCGGAATTGCATAATGTGAGAAGCCAATTGCTAAGTGATTTCACTCCCGAT
EST: GAGAATGCATAGTCTCCACAATCATGAACAACATCGCAAATATGCTGGAT GCGGAATTGCATAATGTGAGAAGCCAATTGCTAAGTGATTTCACTCCCGATEST: gi|32869573|gb|CF009255.1|CF009255
genomic: GAGAATGCATAGTCTCCACAATCATGAACAACATCGCAAATATGCTGGATgtaatgttga ... atttttgcagGCGGAATTGCATAATGTGAGAAGCCAATTGCTAAGTGATTTCACTCCCGAT
EST: GAGAATGCATAGTCTCCACAATCATGAACAACATCGCAAATATGCTGGAT GCGGAATTGCATAATGGGATAAGTCAATTGCTAAGTGATTTCACTCCCGATEST: gi|21390345|gb|BQ528394.1|BQ528394
genomic: GAGAATGCATAGTCTCCACAATCATGAACAACATCGCAAATATGCTGGATgtaatgttga ... atttttgcagGCGGAATTGCATAATGTGAGAAGCCAATTGCTAAGTGATTTCACTCCCGAT
EST: GAGAATGCATAGTCTCCACAATCATGAACAACATCGCAAATATGCTGGAT GCGGAATTGCATAATGTGAGAAGCCAATTGCTAAGTGATTTCACTCCCGAT
genomic: GAGAATGCATAGTCTCCACAATCATGAACAACATCGCAAATATGCTGGATgtaatgttga ... atttttgcagGCGGAATTGCATAATGTGAGAAGCCAATTGCTAAGTGATTTCACTCCCGAT
ctcattgttttgaccgagttccatgcagctgctgatgactttcctatttttgcagGCGGAATTGCATAATGTGAGAAGCCAATTGCTAAGTGATTTCACTCCCGATGACATGTGTCCTACAAGCACTCAGTTCTTTGAAGTGCATGCTGATAACC
tgctgat putative branch site (score: 12)
ctttcctatttttgc putative PPT
tattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgttgaccttcccgatcgcatcttgttctcattgttttgaccgagttccatgcagctgctgatgactttcctatttttgcagGCGGAATTGCATAATGTGAGAAGCCAATTGCTAAGTGATTTCACTCCCGATGACATGTGTCCTACAAGCACTCAGTTCTTTGAAGTGCATGCTGATAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT