1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgacaaactgtccacctgaaattaaaaggataaatattattaatttctaaaggttgttttatgccgtcattgcttatcttgtgtagcattacttcttcagCATCATGGGAGAAAATCTTACTGTCAGGGTTCAGAGGATGTTGTACG
species | Zea mays |
transcript | GRMZM2G427805_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCAATGGATAAGGCATATTAAATAGTAATGCTCCTTCCATTTCATAATGT CATCATGGGAGAAAATCTTACTGTCAGGGTTCAGAGGATGTTGTACG
genomic: TCAATGGATAAGGCATATTAAATAGTAATGCTCCTTCCATTTCATAATGTgtaaggcata ... acttcttcagCATCATGGGAGAAAATCTTACTGTCAGGGTTCAGAGGATGTTGTACG
tctaaaggttgttttatgccgtcattgcttatcttgtgtagcattacttcttcagCATCATGGGAGAAAATCTTACTGTCAGGGTTCAGAGGATGTTGTACG
ttctaaa putative branch site (score: 4)
ttacttcttc putative PPT
ttgttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgacaaactgtccacctgaaattaaaaggataaatattattaatttctaaaggttgttttatgccgtcattgcttatcttgtgtagcattacttcttcagCATCATGGGAGAAAATCTTACTGTCAGGGTTCAGAGGATGTTGTACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - cacctga
- - - - - - - - - - - - - - - - - - - - - - - - - - gttgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtagca