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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactggcaataccaatttcttttcttgggcccatgaagtgtgtggggaagtccttttttcattggttcttgtcacagGATGGAGCAAATGGAGCTGTGAAGAATAAAGCTTTGGAATATAAACAAATAACATACATGCAG

Basic information

species Zea mays
transcript GRMZM2G426275_T01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76285204|gb|DV024772.1|DV024772
EST:     GTATCAGACATCAGTTGCTTCGAAGTTTCCGCTTTTTATATCTCAG                         GATGGAGCAAATGGAGCTGTGAAGAATAAAGCTTTGGAATATAAACAAATA
genomic: GTATCAGACATCAGTTGCTTCGAAGTTTCCGCTTTTTATATCTCAGgtactggcaa ... cttgtcacagGATGGAGCAAATGGAGCTGTGAAGAATAAAGCTTTGGAATATAAACAAATA
EST: gi|71439957|gb|DR821007.1|DR821007
EST:     GTATCAGACATCAGTTGCTTCGAAGTTTCCGCTTTTTATATCTCAG                         GATGGAGCAAATGGAGCTGTGAAGAATAAAGCTTTGGAATATAAACAAATA
genomic: GTATCAGACATCAGTTGCTTCGAAGTTTCCGCTTTTTATATCTCAGgtactggcaa ... cttgtcacagGATGGAGCAAATGGAGCTGTGAAGAATAAAGCTTTGGAATATAAACAAATA
EST: gi|148986617|gb|EE030388.2|EE030388
EST:     GTATCAGACATCAGTTGCTTCGAAGTTTCCGCTTTTTATATCTCAG                         GATGGAGCAAATGGAGCTGTGAAGAATAAAGCTTTGGAATATAAACAAATA
genomic: GTATCAGACATCAGTTGCTTCGAAGTTTCCGCTTTTTATATCTCAGgtactggcaa ... cttgtcacagGATGGAGCAAATGGAGCTGTGAAGAATAAAGCTTTGGAATATAAACAAATA
EST: gi|74244431|gb|DT652345.1|DT652345
EST:     GTATCAGACATCAGTTGCTTCGAAGTTTCCGCTTTTTATATCTCAG                         GATGGAGCAAATGGAGCTGTGAAGAATAAAGCTTTGGAATATAAACAAATA
genomic: GTATCAGACATCAGTTGCTTCGAAGTTTCCGCTTTTTATATCTCAGgtactggcaa ... cttgtcacagGATGGAGCAAATGGAGCTGTGAAGAATAAAGCTTTGGAATATAAACAAATA
EST: gi|149082839|gb|EE172063.2|EE172063
EST:     GTATCAGACATCAGTTGCTTCGAAGTTTCCGCTTTTTATATCTCAG                         GATGGAGCAAATGGAGCTGTGAAGAATAAAGCTTTGGAATATAAACAAATA
genomic: GTATCAGACATCAGTTGCTTCGAAGTTTCCGCTTTTTATATCTCAGgtactggcaa ... cttgtcacagGATGGAGCAAATGGAGCTGTGAAGAATAAAGCTTTGGAATATAAACAAATA
EST: gi|211529739|gb|FL258565.1|FL258565
EST:     GTATCAGACATCAGTTGCTTCGAAGTTTCCGCTTTTTATATCTCAG                         GATGGAGCAAATGGAGCTGTGAAGAATAAAGCTTTGGAATATAAAACAA-T
genomic: GTATCAGACATCAGTTGCTTCGAAGTTTCCGCTTTTTATATCTCAGgtactggcaa ... cttgtcacagGATGGAGCAAATGGAGCTGTGAAGAATAAAGCTTTGGAATATAAA-CAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgggcccatgaagtgtgtggggaagtccttttttcattggttcttgtcacagGATGGAGCAAATGGAGCTGTGAAGAATAAAGCTTTGGAATATAAACAAATAACATACATGCAG
                                           ttcttgtc  CT-rich tract
                               ttttttcatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtactggcaataccaatttcttttcttgggcccatgaagtgtgtggggaagtccttttttcattggttcttgtcacagGATGGAGCAAATGGAGCTGTGAAGAATAAAGCTTTGGAATATAAACAAATAACATACATGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA