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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgaaatgttcacagtgcgtgaacactctggaatctggataccaccagactaggatactctgatgtcttccatcatcgcagtgaccatgcctttgtgacatttactactaaagctttgggattgccagtgcccttttatgtctatttcatgttaatggtgtgcttgaattttcagATCAGTTTTGTAATTGATGAACGCCTACGTGGTAAAGGATACAAGCGCAAG

Basic information

species Zea mays
transcript GRMZM2G421655_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G421655_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os07g30980.1 (Oryza sativa), 3'ss of exon 26
gtactgaaatgttcacagtgcgtgaacactctggaatctggataccaccagactaggatactctgatgtcttccatcatcgcagtgaccatgcctttgtgacat-ttactactaaagctttgggattgccagtgccctttta-tgtctatttcatgttaatggt----gtgcttgaattttcagATCAGTTTTGTAATTGATGAACGCCTACGTGGTAAAGGATACAAGCGCAAG
                                                                                  ||    || |  | || ||||| ||| | || || |  |   ||||  | |||  |  || |||  |||||||||| |   |     ||||||  |||||||||  ||||||| |||||||||||  |||| |||||||||||||||||||||
---------------------------------------------------------------------------------taggagtcagga-tctgagacatgttagttctgaaacagtc--attggtattgcattgctactgtacatttcatgttcagtctatctatgcttgccttttcagATTGGTTTTGTTATTGATGAACGTTTACGAGGTAAAGGATACAAGCGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211145564|gb|FL475598.1|FL475598
EST:     ATTGGGGCAAGAAGCAGGCATTTCAAAATCCAAAGAGATTACTTGAAAAG                         ATCAGTTTTGTAATTGATGAACGCCTACGTGGTAAAGGATACAAGCGCAAG
genomic: ATTGGGGCAAGAAGCAGGCATTTCAAAATCCAAAGAGATTACTTGAAAAGgtactgaaat ... gaattttcagATCAGTTTTGTAATTGATGAACGCCTACGTGGTAAAGGATACAAGCGCAAG
EST: gi|67025795|gb|CO454544.1|CO454544
EST:     ATTGGGGCAAGAAGCAGGCATTTCAAAATCCAAAGAGATTACTTGAAAAG                         ATCAGTTTTGTAATTGATGAACGCCTACGTGGTAAAGGATACAAGCGCAAG
genomic: ATTGGGGCAAGAAGCAGGCATTTCAAAATCCAAAGAGATTACTTGAAAAGgtactgaaat ... gaattttcagATCAGTTTTGTAATTGATGAACGCCTACGTGGTAAAGGATACAAGCGCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgccagtgcccttttatgtctatttcatgttaatggtgtgcttgaattttcagATCAGTTTTGTAATTGATGAACGCCTACGTGGTAAAGGATACAAGCGCAAG
                             tgttaat  putative branch site (score: 3)
                                                ttttc  putative PPT
             ttttatgtctattt  TA-rich tract