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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aagtacacattacccatacagtctcctgtgtgtttgataaaaaaaagtatttgagacttccagactcgagtgatctgatgaggcctgtttttgaatgcagTGTGGAAAAATAAGTGAAGCAGAGATGCAATTTGAAAAGCTTTTAGGTCCCCTTCATGTAAAATCTGCCATGGCAGAACTTTCTAGATATGAAAGAGTAG

Basic information

species Zea mays
transcript GRMZM2G412899_T04
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G412899_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g17500.1 (Oryza sativa), 3'ss of exon 8
aagtacacattacccatacagtctcctgtgtgt-ttgataaaaaaaagt---atttgagacttccagactcgagtgatctgatgaggcctgtttttgaatgcagTGTGGAAAAATAAGTGAAGCAGAGATGCAATTTGAAAAGCTTTTAGGTCCCCTTCATGTAAAATCTGCCATGGCAGAACTTTCTAGATATGAAAGAGTAG
     | |||    | |    |   |  | ||| |||| | |   |  |   | |||   |    | | |  |      ||| ||| | | | ||| | | |||||||||| ||  | |||||||||||| ||||||||||| ||| ||||||| |||||||| || ||||| ||||||||||| ||  ||| ||||||||  |
---ctcccatacttctttatattggcaatttgtattgacatatttatatttaacttgtagcacatacattgaaaattattgacgagtcttatcttttatt-cagTGTGGAAGAACGACTGAAGCAGAGATACAATTTGAAAAACTTCTAGGTCCTCTTCATGTTAAGTCTGCTATGGCAGAACTCTCCCGATCTGAAAGAGGCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71766867|gb|DR964804.1|DR964804
EST:     AAGCTCTCGGTATGGAGTTTTGTGCTGAGAGCCCTCAGTGGCTTTATAAG                         TGTGGAAAAATAAGTGAAGCAGAGATGCAATTTGAAAAGCTTTTAGGTCCC
genomic: AAGCTCTCGGTATGGAGTTTTGTGCTGAGAGCCCTCAGTGGCTTTATAAGgtacttctgc ... ttgaatgcagTGTGGAAAAATAAGTGAAGCAGAGATGCAATTTGAAAAGCTTTTAGGTCCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtatttgagacttccagactcgagtgatctgatgaggcctgtttttgaatgcagTGTGGAAAAATAAGTGAAGCAGAGATGCAATTTGAAAAGCTTTTAGGTCCCCTTCATGTAAAATCTGCCATGGCAGAACTTTCTAGATATGAAAGAGTAG
                           atctgat  putative branch site (score: 4)
                                      cctgttttt  putative PPT
                                          tttttgaat  TA-rich tract