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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagaaaggataaaaaaaaagagtaagcgcacataagattaataatatgggttgtgctaatatatatctctatggaagGTTCAAGGAGTTGTCAACGATGCTGATGGAAGCAAGGTCGCAACATTGATGGGGAAGTGGGATGAAAGTATGCATTATATCATCAACAATGATGCCTCCA

Basic information

species Zea mays
transcript GRMZM2G409265_T01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60346794|gb|DN213767.1|DN213767
EST:     GCAAACTGACGTTTAAAGAGCAGTCTTTCCTTGATCGGAATCCTCGCCAG                         GTTCAAGGAGTTGTCAACGATGCTGATGGAAGCAAGGTCGCAACATTGATG
genomic: GCAAACTGACGTTTAAAGAGCAGTCTTTCCTTGATCGGAATCCTCGCCAGgtaaagaaag ... tctatggaagGTTCAAGGAGTTGTCAACGATGCTGATGGAAGCAAGGTCGCAACATTGATG
EST: gi|60344714|gb|DN211687.1|DN211687
EST:     GCAAACTGACGTTTAAAGAGCAGTCTTTCCTTGATCGGAATCCTCGCCAG                         GTTCAAGGAGTTGTCAACGATGCTGATGGAAGCAAGGTCGCAACATTGATG
genomic: GCAAACTGACGTTTAAAGAGCAGTCTTTCCTTGATCGGAATCCTCGCCAGgtaaagaaag ... tctatggaagGTTCAAGGAGTTGTCAACGATGCTGATGGAAGCAAGGTCGCAACATTGATG
EST: gi|60344453|gb|DN211426.1|DN211426
EST:     GCAAACTGACGTTTAAAGAGCAGTCTTTCCTTGATCGGAATCCTCGCCAG                         GTTCAAGGAGTTGTCAACGATGCTGATGGAAGCAAGGTCGCAACATTGATG
genomic: GCAAACTGACGTTTAAAGAGCAGTCTTTCCTTGATCGGAATCCTCGCCAGgtaaagaaag ... tctatggaagGTTCAAGGAGTTGTCAACGATGCTGATGGAAGCAAGGTCGCAACATTGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagcgcacataagattaataatatgggttgtgctaatatatatctctatggaagGTTCAAGGAGTTGTCAACGATGCTGATGGAAGCAAGGTCGCAACATTGATGGGGAAGTGGGATGAAAGTATGCATTATATCATCAACAATGATGCCTCCA
                               tgctaat  putative branch site (score: 2)
                                         tatctct  putative PPT
       acataagattaataat  TA-rich tract