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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgttcagatttccatctggcgcatttgatacaatattacagtctacacactattcctggctcttataacatgttttgttttgactttggcactgtccagGGTGATGTTTATCCTGTGGAATCTTACGAGAGCTTATCAGTGAACCATGTACTTGATGCTCATTGGGGTGTTCTGGATGATGATGAT

Basic information

species Zea mays
transcript GRMZM2G407044_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G407044_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g39570.5 (Oryza sativa), 3'ss of exon 6
ttgttcagatttccatctggcgcatttgatacaatattacagtcta---cacactattcctggctcttataacatgtt-ttgttttgactttggcactgtccagGGTGATGTTTATCCTGTGGAATCTTACGAGAGCTTATCAGTGAACCATGTACTTGATGCTCATTGGGGTGTTCTGGATGATGATGAT
  |  ||||  |   |    |  |     |   ||||  | |||||   ||   | || |||  || | |||||| |  |   ||| ||| |   | ||| ||||| ||||| |||||||||||| |||| ||| | | |||  ||||||| |||||||||||||| ||||| || || |||||||| |||
--ggccagaaatgagt--aacataacaagtcgtatatgcctgtctattgcaatatgttactgattcctgtaacatttagtcacttttactatttaattgttcagGGCGATGTCTATCCTGTGGAACCTTATGAGGGTTCATCCATGAACCAAGTACTTGATGCTCACTGGGGCGTCCTTGATGATGAAGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149075260|gb|EE163764.2|EE163764
EST:     ACCTGATAGATGCGTTGCCGAAAAATCCACTTACATCTGTAAATAGGACAGTTAATGGCAGTTTTGGTCAACCATCCAATGCTGGG
genomic: CTGTAAATAGGACAGTTAATGGCAGTTTTGGTCAACCATCCAATGCTGGGgtatgtaacc ... cactgtccagGGTGATGTTTA
EST: gi|149087824|gb|EE177122.2|EE177122
EST:     CGAAAAATCCACTTACATCTGTAAATAGGACAGTTAATGGCAGTTTTGGTCAACCATCCAATGCTGGG        
genomic: CTGTAAATAGGACAGTTAATGGCAGTTTTGGTCAACCATCCAATGCTGGGgtatgtaacc ... cactgtccagG
EST: gi|78122764|gb|DV541148.1|DV541148
EST:     ACCTGATAGATGCGTTGCCGAAAAATCCACTTACATCTGTAAATAGGACAGTTAATGGCAGTTTTGGTCAACCATCCAATGCTGGG
genomic: CTGTAAATAGGACAGTTAATGGCAGTTTTGGTCAACCATCCAATGCTGGGgtatgtaacc ... cactgtccagGGTGATGTTTA
EST: gi|71435773|gb|DR816823.1|DR816823
EST:     ACCTGATAGATGCGTTGCCGAAAAATCCACTTACATCTGTAAATAGGACAGTTAATGGCAGTTTTGGTCAACCATCCAATGCTGGG
genomic: CTGTAAATAGGACAGTTAATGGCAGTTTTGGTCAACCATCCAATGCTGGGgtatgtaacc ... cactgtccagGGTGATGTTTA
EST: gi|166672162|gb|EG169794.1|EG169794
EST:     CTGTAAATAGGACAGTTAATGGCAGTTTTGGTCAACCATCCAATGCTGGG                         G-TGATGTTTATCCTGTGGAAT
genomic: CTGTAAATAGGACAGTTAATGGCAGTTTTGGTCAACCATCCAATGCTGGGgtatgtaacc ... cactgtccagGGTGATGTTTATCCTGTGGAAT
EST: gi|148949305|gb|EC894756.2|EC894756
EST:     ACCTGATAGATGCGTTGCCGAAAAATCCACTTACATCTGTAAATAGGACAGTTAATGGCAGTTTTGGTCAACCATCCAATGCTGGG
genomic: CTGTAAATAGGACAGTTAATGGCAGTTTTGGTCAACCATCCAATGCTGGGgtatgtaacc ... cactgtccagGGTGATGTTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acacactattcctggctcttataacatgttttgttttgactttggcactgtccagGGTGATGTTTATCCTGTGGAATCTTACGAGAGCTTATCAGTGAACCATGTACTTGATGCTCATTGGGGTGTTCTGGATGATGATGAT
                  ttataacatgtttt  TA-rich tract