Sequence
atgc intronic sequence ATGC exonic sequencegtatggatctacatgtggattgccacataaaagtgtttggtaactaagtttttgtccttaattgcttggccattcctggattcagGAGAAACTTCCACCTACTGATTCACGGCTGAGACCAGACCAGCGCCACCTAGAGAATGGTGAATACGAGAAAGCGAATGCAGAGAAGCTGAGGTTGGAAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G402653_T05 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os08g05870.1 (Oryza sativa), 3'ss of exon 7
gtatggatctacatgtggat-tgccaca----taaaagtgttt----ggtaactaagtttt-tgtccttaattgc-ttggccattcctggattcagGAGAAACTTCCACCTACTGATTCACGGCTGAGACCAGACCAGCGCCACCTAGAGAATGGTGAATACGAGAAAGCGAATGCAGAGAAGCTGAGGTTGGAAC
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gtatgtgtgtagtcatgaatactccacaagctttgaattgtttacttgatatcaagactcaatgatcctaattgaattgattggtcatgttcaaagGACAAACTCCCTCCTACTGATTCACGGCTAAGGCCAGACCAGCGGCATCTAGAGAACGGTGAATATGAGAAGGCAAACGCGGAGAAGCTGAGGTTGGAAC
upper sequence: GRMZM2G402653_T05 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA05G04340.2 (Glycine max), 3'ss of exon 9
----------------------------gtatggatctacatgtggattgccacataaaagtgtttggtaacta-agtttttgtccttaattgcttggccattcctggattca-gGAGAAACTTCCACCTACTGATTCACGGCTGAGACCAGACCAGCGCCACCTAGAGAATGGTGAATACGAGAAAGCGAATGCAGAGAAGCTGAGGTTGGAAC
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gtataatgatgtattaaatcattattcgatgtgcgttttcttttttcttcttatgcatctctaattctttgttatagccttttctgatcccgggtaatttgatcacggattaaagGAGAAGCTTCCACCCACGGATTCCAGGCTGAGACCAGATCAGCGGCATCTAGAGAATGGGGAATACGAGAAGGCTAATATGGAAAAACAAAGGTTGGAAA
upper sequence: GRMZM2G402653_T05 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA01G41940.1 (Glycine max), 3'ss of exon 8
-----------------------gtatg-gatctacatgtggattgccacataaaagtgtttggtaactaa-gtttttgtccttaattg--cttggccatt----cctggattca-gGAGAAACTTCCACCTACTGATTCACGGCTGAGACCAGACCAGCGCCACCTAGAGAATGGTGAATACGAGAAAGCGAATGCAGAGAAGCTGAGGTTGGAAC
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gtatataatgatgtattagatcattatttgatacgcattccacttcttatatatgcgtcgtctctaattgttgtttatagctttttctgatcccgggtatttgatcacggattaaagGAGAAACTCCCGCCCACGGATTCCAGGCTCAGACCAGATCAACGGCATCTAGAGAATGGGGAATACGAGAAGGCCAATTTGGAGAAACAAAGGTTGGAAA
upper sequence: GRMZM2G402653_T05 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA17G14820.1 (Glycine max), 3'ss of exon 9
----------------------------gtatggatctacatgtggattgccacataaaagtgtttggtaacta-agtttttgtccttaattgcttggccattcctggattca-gGAGAAACTTCCACCTACTGATTCACGGCTGAGACCAGACCAGCGCCACCTAGAGAATGGTGAATACGAGAAAGCGAATGCAGAGAAGCTGAGGTTGGAAC
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gtataatgatgtattaaatcattattcgatgtgcgttttcctttttcttcttatgcatctctaattctttgttatagccttttctgatcccgggtaatttgatcacggattaaagGAGAAGCTTCCACCCACGGATTCCAGGCTGAGACCAGACCAGCGACATCTAGAGAATGGGGAATACGAGAAGGCTAATATGGAGAAACAAAGGTTGGAAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33099373|gb|CF059333.1|CF059333EST: ATTTATCTTCATTCGCGATCACACTGAATGAGTTGACCCCAGGGCTGCAG GAGAAACTTCCACCTACTGATTCACGGC
genomic: ATTTATCTTCATTCGCGATCACACTGAATGAGTTGACCCCAGGGCTGCAGgtatggatct ... ctggattcagGAGAAACTTCCACCTACTGATTCACGGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagtgtttggtaactaagtttttgtccttaattgcttggccattcctggattcagGAGAAACTTCCACCTACTGATTCACGGCTGAGACCAGACCAGCGCCACCTAGAGAATGGTGAATACGAGAAAGCGAATGCAGAGAAGCTGAGGTTGGAAC
ccattcct CT-rich tract
taagttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatggatctacatgtggattgccacataaaagtgtttggtaactaagtttttgtccttaattgcttggccattcctggattcagGAGAAACTTCCACCTACTGATTCACGGCTGAGACCAGACCAGCGCCACCTAGAGAATGGTGAATACGAGAAAGCGAATGCAGAGAAGCTGAGGTTGGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA