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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactcactatgcaatctttatttacttaccttgtttcacattattttgtattgacgtgattgctcatgttttaacaacaattttttttattcaacttatatatacagAAAAGGTTTTTGAGAAAACTGCGCCATATGCAATTTCTGTGTTGGACGGATTTAATGTTTGCATCTTTGCTTATGGGCAAACTGGTACTGGTAAAACATT

Basic information

species Zea mays
transcript GRMZM2G400223_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G400223_T03 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os12g42160.1 (Oryza sativa), 3'ss of exon 8
gtaactcactatgcaatctttatttacttaccttgtttcacattattttgtattgacgtgattgctcatgttttaacaacaattttttttattcaacttatatatacagAAAAGGTTTTTGAGAAAACTGCGCCATATGCAATTTCTGTGTTGGACGGATTTAATGTTTGCATCTTTGCTTATGGGCAAACTGGTACTGGTAAAACATT
           |  |  | ||  | |||      ||||   || |   |||||        ||||||| |||||   ||| || |  | |  ||   || | | |||||||||||| ||||||||||||| ||| | ||||| ||| ||| |||| || |  ||||||||||| ||||||||||| || || || ||||||||||||||
----------gtaaatcccttcataactagtacagttt---atcaacctgtatcc------ttgctcaagtttt--taacgatgtaatgttctccgatt-tctctacagAAAAGGTGTTTGAGAAAACTGTGCCTTTTGCAACTTCAGTGCTGGATGGGTACAATGTTTGCATATTTGCTTATGGACAGACGGGCACTGGTAAAACATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacgtgattgctcatgttttaacaacaattttttttattcaacttatatatacagAAAAGGTTTTTGAGAAAACTGCGCCATATGCAATTTCTGTGTTGGACGGATTTAATGTTTGCATCTTTGCTTATGGGCAAACTGGTACTGGTAAAACATT
                ttttaac  putative branch site (score: 2)
             atgttttaacaacaat  TA-rich tract