1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...taggtcagacttggatgttctgttatcaagctcgctagtgtttacagtacgtaccagtgcctgagctttttcatatgattaatttcttgttttggcttagATTATACGCTGAGGACAAACTTCGGTAAGGTGTACAAATTTGGCTCGTGGAAGAGGCTTCAGAATGCAATGGAGCGGCTGACAAAGGGAACTGACTACTG
species | Zea mays |
transcript | GRMZM2G398288_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATTTGAGGCTGTGTTGATTCATTTGTTGAGCTGATTTTTGTCGAATTTTG ATTATACGCTGAGGACAAACTTCGGTAAGGTGTACAAATTTGGCTCGTGGAEST: gi|5762165|gb|AI967213.1|AI967213
genomic: ATTTGAGGCTGTGTTGATTCATTTGTTGAGCTGATTTTTGTCGAATTTTGgtaagttctg ... tttggcttagATTATACGCTGAGGACAAACTTCGGTAAGGTGTACAAATTTGGCTCGTGGA
EST: ATTTGAGGCTGTGTTGATTCATTTGTTGAGCTGATTTTTGTCGAATTTTG ATTATACGCTGAGGACAAACTTCGGTAAGGTGTACAAATTTGGCTCGTGGAEST: gi|5597154|gb|AI891357.1|AI891357
genomic: ATTTGAGGCTGTGTTGATTCATTTGTTGAGCTGATTTTTGTCGAATTTTGgtaagttctg ... tttggcttagATTATACGCTGAGGACAAACTTCGGTAAGGTGTACAAATTTGGCTCGTGGA
EST: ATTTGAGGCTGTGTTGATTCATTTGTTGAGCTGATTTTTGTCGAATTTTG ATTATACGCTGAGGACAAACTTCGGTAAGGTGTACAAATTTGGCTCGTGGAEST: gi|71332821|gb|DR803418.1|DR803418
genomic: ATTTGAGGCTGTGTTGATTCATTTGTTGAGCTGATTTTTGTCGAATTTTGgtaagttctg ... tttggcttagATTATACGCTGAGGACAAACTTCGGTAAGGTGTACAAATTTGGCTCGTGGA
EST: ATTTGAGGCTGTGTTGATTCATTTGTTGAGCTGATTTTTGTCGAATTTTG ATTATACGCTGAGGACAAACTTCGGTAAGGTGTACAAATTTGGCTCGTGGAEST: gi|32933511|gb|CF038323.1|CF038323
genomic: ATTTGAGGCTGTGTTGATTCATTTGTTGAGCTGATTTTTGTCGAATTTTGgtaagttctg ... tttggcttagATTATACGCTGAGGACAAACTTCGGTAAGGTGTACAAATTTGGCTCGTGGA
EST: ATTTGAGGCTGTGTTGATTCATTTGTTGAGCTGATTTTTGTCGAATTTTG ATTATACGCTGAGGACAAACTTCGGTAAGGTGT
genomic: ATTTGAGGCTGTGTTGATTCATTTGTTGAGCTGATTTTTGTCGAATTTTGgtaagttctg ... tttggcttagATTATACGCTGAGGACAAACTTCGGTAAGGTGT
agtacgtaccagtgcctgagctttttcatatgattaatttcttgttttggcttagATTATACGCTGAGGACAAACTTCGGTAAGGTGTACAAATTTGGCTCGTGGAAGAGGCTTCAGAATGCAATGGAGCGGCTGACAAAGGGAACTGACTACTG
gattaat putative branch site (score: 70)
tttcttgtttt CT-rich tract
tttttcatatgattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taggtcagacttggatgttctgttatcaagctcgctagtgtttacagtacgtaccagtgcctgagctttttcatatgattaatttcttgttttggcttagATTATACGCTGAGGACAAACTTCGGTAAGGTGTACAAATTTGGCTCGTGGAAGAGGCTTCAGAATGCAATGGAGCGGCTGACAAAGGGAACTGACTACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - -tgttctg
- - - - - - - - - - - - - caagctc
- - - - - - - - - - - - - - - - -gctagtg
- - - - - - - - - - - - - - - - - - - - - - - - - gtaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcttg