Sequence
atgc intronic sequence ATGC exonic sequencegtagttttttattgtaatttaccagttacttttcaccatgtgacttgttcatgcttagtacttaggcatatttataagctatctttaagctttcatatcattatgtagATTGCATCTTTAGCGATTCGAAGTGGCAATGGTCTTCTCTTGAAAGGTGGAAAAGAAGCCATGAGATCAAACAAAGTATTGCATAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G389416_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os05g38150.2 (Oryza sativa), 3'ss of exon 9
gtagttttttattgtaatttaccagttacttttcaccatgtgacttgttcatgcttagtacttaggcatatttataagctatctttaagctttcatatcattatg--tagATTGCATCTTTAGCGATTCGAAGTGGCAATGGTCTTCTCTTGAAAGGTGGAAAAGAAGCCATGAGATCAAACAAAGTATTGCATAAG
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-------------gtattttgttc-tggcaatgcactgtgt--tccattcttttccagaa--tacatatacttctaagtaac---taa--ttttgtgtcattgttgttagATTGCATCTTTGGCAATTCGAAGTGGTAATGGTCTTCTCCTAAAAGGTGGAAAAGAAGCTATCAGATCAAACACGATATTGCATAAG
upper sequence: GRMZM2G389416_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA02G41850.1 (Glycine max), 3'ss of exon 7
gtagttttttattgtaatttaccagttacttttcaccatgtgacttgttcatgcttagtacttaggcatatttataagctatctttaagctttcatatcat-tatgtagATTGCATCTTTAGCGATTCGAAGTGGCAATGGTCTTCTCTTGAAAGGTGGAAAAGAAGCCATGAGATCAAACAAAGTATTGCATAAG
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--ggattaatgttatggtatg--aatgaacttt----atgagcttaaagcagtttgattggttatctgtatctacattttaagtggtagctt-cttatcatctgaacagATAGCTTCACTGGCAATCCGAAGTGGGAATGGACTTCTCTTGAAAGGTGGCAAAGAAGCTAGGCGGTCAAATGCAATTTTGCACAAA
upper sequence: GRMZM2G389416_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA14G07120.1 (Glycine max), 3'ss of exon 7
gtagttttttattgtaatttaccagttacttttcaccatgtgacttgttcatgcttagtacttag-gcatatttataagctatctttaagctttcatatcat-tatgtagATTGCATCTTTAGCGATTCGAAGTGGCAATGGTCTTCTCTTGAAAGGTGGAAAAGAAGCCATGAGATCAAACAAAGTATTGCATAAG
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-----gtatgaatgaaccttatgag---cctaaagctgtttga-ttgattatctgtattatatgctgtttatcaacattttaagtggtagctt-cttatcatctgaacagATAGCTTCGCTGGCAATCCGAAGTGGGAATGGGCTTCTCTTGAAAGGTGGCAAAGAAGCTAAGCGGTCAAATGCAATTTTGCACAAA
upper sequence: GRMZM2G389416_T01 (Zea mays), 3'ss of exon 7
lower sequence: Vv13s0019g02360.t01 (Vitis vinifera), 3'ss of exon 10
gtagttttttattgtaatttaccagttacttttcaccatgtgacttgttcatgcttagtacttaggcatatttataagctatctttaagctttcatatcattatgtagATTGCATCTTTAGCGATTCGAAGTGGCAATGGTCTTCTCTTGAAAGGTGGAAAAGAAGCCATGAGATCAAACAAAGTATTGCATAAG
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-gagctattacatggaattaa--agttgtttgtttcttaattg-ttgtgctattttccttatcattttaagtcaacatcatttttgggggtgtgat----ttgaacagATAGCTTCATTAGCAATCCGAAGTGGGAATGGACTTCTCTTGAAAGGTGGAAAAGAGGCCAAGCGATCTAATGCAATCTTGCACAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttagtacttaggcatatttataagctatctttaagctttcatatcattatgtagATTGCATCTTTAGCGATTCGAAGTGGCAATGGTCTTCTCTTGAAAGGTGGAAAAGAAGCCATGAGATCAAACAAAGTATTGCATAAG
atatttataagctatc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagttttttattgtaatttaccagttacttttcaccatgtgacttgttcatgcttagtacttaggcatatttataagctatctttaagctttcatatcattatgtagATTGCATCTTTAGCGATTCGAAGTGGCAATGGTCTTCTCTTGAAAGGTGGAAAAGAAGCCATGAGATCAAACAAAGTATTGCATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA