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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttctatgctggtaaacggtgagtgaacaacgagtaaatcttttggatcaatttgaccttttgaatgtgttttgaatagGTTGGGTGGCAGAGAGTTTCTGCTTCCTGTTGGGATTGTTCTCAAG

Basic information

species Zea mays
transcript GRMZM2G388892_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G388892_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os10g35290.1 (Oryza sativa), 3'ss of exon 4
gtaagttctatgctggtaaacggtgagtgaacaacgagtaaatc---ttttggatc----aatttgaccttttgaatgtgttttgaat--agGTTGGGTGGCAGAGAGTTTCTGCTTCCTGTTGGGATTGTTCTCAAG
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gtaagttctgcactggcaaattgtgagtgga-aatgcttgagtttctttttagtttttggaacttgat-tcttgaatttgtgcaaaattcagGTTGGGAGGCAGAGAATTTCTCCTTCCTGTTGGGATTGTTCTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33093161|gb|CF053155.1|CF053155
EST:     ACAATAAAGTTGTATTACATCCTAAATGGAAGTGCAAGGCTTGGATTTTG                         GTTGGGTGGCAGAGAGTTTCTGCTTCCTGTTGGGATTGTTCTCAAG
genomic: ACAATAAAGTTGTATTACATCCTAAATGGAAGTGCAAGGCTTGGATTTTGgtaagttcta ... ttttgaatagGTTGGGTGGCAGAGAGTTTCTGCTTCCTGTTGGGATTGTTCTCAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaacaacgagtaaatcttttggatcaatttgaccttttgaatgtgttttgaatagGTTGGGTGGCAGAGAGTTTCTGCTTCCTGTTGGGATTGTTCTCAAG
                          atttgac  putative branch site (score: 4)
          taaatctttt  TA-rich tract