1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aatttataggtgcagcttctcatacccataaatgcatgtccccttaatgattagattcaaatgagctttccattttttgacatttatgcttatgtcgcagAACACAAATCCTCATTAGAGGCAGCAATGGAATTGGATGCCCAACAGCATCATGGAGCACCACCTGCCCTTTCTGCAACAGAAGATGAAGAAAAATCTCC
species | Zea mays |
transcript | GRMZM2G388148_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGGGTTGCGAGAGTATCTCCGGGTGATTATCACACGTGGAAAAATAAATG AACACAAATCCTCATTAGAGGCAGCAATGGAATTGGATGCCCAACAGCATCEST: gi|89757041|gb|DY686817.1|DY686817
genomic: TGGGTTGCGAGAGTATCTCCGGGTGATTATCACACGTGGAAAAATAAATGgtgagtgtct ... tatgtcgcagAACACAAATCCTCATTAGAGGCAGCAATGGAATTGGATGCCCAACAGCATC
EST: TGGGTTGCGAGAGTATCTCCGGGTGATTATCACACGTGGAAAAATAAATG AACACAAATCCTCATTAGAGGCAGCAATGGAATTGGATGCCCAACAGCATCEST: gi|71445069|gb|DR826119.1|DR826119
genomic: TGGGTTGCGAGAGTATCTCCGGGTGATTATCACACGTGGAAAAATAAATGgtgagtgtct ... tatgtcgcagAACACAAATCCTCATTAGAGGCAGCAATGGAATTGGATGCCCAACAGCATC
EST: TGGGTTGCGAGAGTATCTCCGGGTGATTATCACACGTGGAAAAATAAATG AACACAAATCCTCATTAGAGGCAGCAATGGAATTGGATGCCCAACAGCATCEST: gi|86472808|gb|DY239178.1|DY239178
genomic: TGGGTTGCGAGAGTATCTCCGGGTGATTATCACACGTGGAAAAATAAATGgtgagtgtct ... tatgtcgcagAACACAAATCCTCATTAGAGGCAGCAATGGAATTGGATGCCCAACAGCATC
EST: TGGGTTGCGAGAGTATCTCCGGGTGATTATCACACGTGGAAAAATAAATG AACACAAATCCTCATTAGAGGCAGCAATGGAATTGGATGCCCAACAGCATCEST: gi|7145334|gb|AW506815.1|AW506815
genomic: TGGGTTGCGAGAGTATCTCCGGGTGATTATCACACGTGGAAAAATAAATGgtgagtgtct ... tatgtcgcagAACACAAATCCTCATTAGAGGCAGCAATGGAATTGGATGCCCAACAGCATC
EST: TGGGTTGCGAGAGTATCTCCGGGTGATTATCACACGTGGAAAAATAAATG AACACAAATCCTCATTAGAGGCAGCAATGGAATTGGATGCCCAACAGCATC
genomic: TGGGTTGCGAGAGTATCTCCGGGTGATTATCACACGTGGAAAAATAAATGgtgagtgtct ... tatgtcgcagAACACAAATCCTCATTAGAGGCAGCAATGGAATTGGATGCCCAACAGCATC
aatgattagattcaaatgagctttccattttttgacatttatgcttatgtcgcagAACACAAATCCTCATTAGAGGCAGCAATGGAATTGGATGCCCAACAGCATCATGGAGCACCACCTGCCCTTTCTGCAACAGAAGATGAAGAAAAATCTCC
ttttgac putative branch site (score: 6)
attttttgacatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatttataggtgcagcttctcatacccataaatgcatgtccccttaatgattagattcaaatgagctttccattttttgacatttatgcttatgtcgcagAACACAAATCCTCATTAGAGGCAGCAATGGAATTGGATGCCCAACAGCATCATGGAGCACCACCTGCCCTTTCTGCAACAGAAGATGAAGAAAAATCTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - ggtgcag
- - - - - - - - - - cataccc
- - - - - - - - - - - - - - - - tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttatgct