1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aagtgggctttatattctagctgccttgcttacttttagtaagaaaaatgtttctgtagctttataagatcttaacttatgtttttctttgttcatgtagATTGTGAACTGGAGAAGTCACTTGAAATTCCCTGAAGAGGCAAAGCTTCCTCCTGAAGCTAAGGCTCTCATCAGCAAGCTTTTGTGTAATGTTGAGCATC
species | Zea mays |
transcript | GRMZM2G375904_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGGTTACCCTCCATTTTATTCAGAGGACCCAATGTCTACTTGCAGAAAG ATTGTGAACTGGAGAAGTCACTTGAAATTCCCTGAAGNNNCNAAGCTTCCTEST: gi|28187719|gb|CB179329.1|CB179329
genomic: TTGGTTACCCTCCATTTTATTCAGAGGACCCAATGTCTACTTGCAGAAAGgtacatgtgg ... gttcatgtagATTGTGAACTGGAGAAGTCACTTGAAATTCCCTGAAGAGGCAAAGCTTCCT
EST: TTGGTTACCCTCCATTTTATTCAGAGGACCCAATGTCTACTTGCAGAAAG ATTGTGAACTGGAGAAGTCACTTGAAATTCCCTGAAGAGGCAAAGTTTCCTEST: gi|5901099|gb|AW042199.1|AW042199
genomic: TTGGTTACCCTCCATTTTATTCAGAGGACCCAATGTCTACTTGCAGAAAGgtacatgtgg ... gttcatgtagATTGTGAACTGGAGAAGTCACTTGAAATTCCCTGAAGAGGCAAAGCTTCCT
EST: GAGGACCCAATGTCTACTTGCAGAAAG ATTGTGAACTGGAGAAGTCACTTGAAATTCCCTGAAGAGGCAAAGCTTCCTEST: gi|33285627|gb|CF075422.1|CF075422
genomic: GAGGACCCAATGTCTACTTGCAGAAAGgtacatgtgg ... gttcatgtagATTGTGAACTGGAGAAGTCACTTGAAATTCCCTGAAGAGGCAAAGCTTCCT
EST: TTGGTTACCCTCCATTTTATTCAGAGGACCCAATGTCTACTTGCAGAAAG ATTGTGAACTGGAGAAGTCACTTGAAATTCCCTGAAGAGGCAAAGCTTCCTEST: gi|211195854|gb|FL001022.1|FL001022
genomic: TTGGTTACCCTCCATTTTATTCAGAGGACCCAATGTCTACTTGCAGAAAGgtacatgtgg ... gttcatgtagATTGTGAACTGGAGAAGTCACTTGAAATTCCCTGAAGAGGCAAAGCTTCCT
EST: TTGGTTACCCTCCATTTTATTCAGAGGACCCAATGTCTACTTGCAGAAAG ATTGTGAACTGGAGAAGTCACTTGAAATTCCCTGAAGAGGCAAAGCTTCCTEST: gi|31628455|gb|CD526616.1|CD526616
genomic: TTGGTTACCCTCCATTTTATTCAGAGGACCCAATGTCTACTTGCAGAAAGgtacatgtgg ... gttcatgtagATTGTGAACTGGAGAAGTCACTTGAAATTCCCTGAAGAGGCAAAGCTTCCT
EST: TTGGTTACCCTCCATTTTATTCAGAGGACCCAATGTCTACTTGCAGAAAG ATTGTGAACTGGAGAAGTCACTTGAAATTCCCTGAAGAGGCAAAGCTTCCTEST: gi|32870336|gb|CF010018.1|CF010018
genomic: TTGGTTACCCTCCATTTTATTCAGAGGACCCAATGTCTACTTGCAGAAAGgtacatgtgg ... gttcatgtagATTGTGAACTGGAGAAGTCACTTGAAATTCCCTGAAGAGGCAAAGCTTCCT
EST: TTGGTTACCCTCCATTTTATTCAGAGGACCCAATGTCTACTTGCAGAAAG ATTGTGAACTGGAGAAGTCACTTGAAATTCCCTGAAGAGGCAAAGCTTCCTEST: gi|211127917|gb|FL461340.1|FL461340
genomic: TTGGTTACCCTCCATTTTATTCAGAGGACCCAATGTCTACTTGCAGAAAGgtacatgtgg ... gttcatgtagATTGTGAACTGGAGAAGTCACTTGAAATTCCCTGAAGAGGCAAAGCTTCCT
EST: TTGGTTACCCTCCATTTTATTCAGAGGACCCAATGTCTACTTGCAGAAAG ATTGTGAACTGG
genomic: TTGGTTACCCTCCATTTTATTCAGAGGACCCAATGTCTACTTGCAGAAAGgtacatgtgg ... gttcatgtagATTGTGAACTGG
aaatgtttctgtagctttataagatcttaacttatgtttttctttgttcatgtagATTGTGAACTGGAGAAGTCACTTGAAATTCCCTGAAGAGGCAAAGCTTCCTCCTGAAGCTAAGGCTCTCATCAGCAAGCTTTTGTGTAATGTTGAGCATC
tcttaac putative branch site (score: 448)
tgtttttctttgttc putative PPT
tttataagatcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtgggctttatattctagctgccttgcttacttttagtaagaaaaatgtttctgtagctttataagatcttaacttatgtttttctttgttcatgtagATTGTGAACTGGAGAAGTCACTTGAAATTCCCTGAAGAGGCAAAGCTTCCTCCTGAAGCTAAGGCTCTCATCAGCAAGCTTTTGTGTAATGTTGAGCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - agctgcc
- - - - - - - - - - - - - tgcttac
- - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtagc