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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gactaacaccattattgtttaaatgtacttgtcttttaacatccgcatattctatggcagcctgtatgattcagttgatatctgtatattatatatgcagTCTGGATTTTTTTGCATTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAGGTTTGAATGCATTGGCTTAAATCGAACTTGATTT

Basic information

species Zea mays
transcript GRMZM2G374779_T03
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G374779_T03 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os03g01150.1 (Oryza sativa), 3'ss of exon 7
----gactaac-accattattgtttaaatgtacttgtcttttaacatc-cgcatattctatggcagcc-tgtatgattcagttgatatctgtatattatatatgcagTCTGGATTTTTTTGCATTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAGGTTTGAATGCATTGGCTTAAATCGAACTTGATTT
    | ||    ||  |||||    ||   ||| ||| |  || | |   |   ||| ||  |||||    ||| ||  || | || | ||| ||||     ||||||||||  ||||||||||| ||| |||| | ||||| ||| |||||||||||||||||||||| |||                                  
ctctgcctggttacagttatttcacaagaatacatgtgtggtaccttgatgttaattttactgcagctacctataat--agctcatctttgtttatt-----tgcagTCTGGTATTTTTTGCATTCTTGCTGATTCCCTGATTAAAATGGAGATCTACTCAGACTATGTCCAG----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211340859|gb|FL372915.1|FL372915
EST:     TCTCTCTAGGAGGTCCTCATGCTGGTACCGCTTCAGTGCCTCTTTGTGGT                         TCTGGANNNNNNNGCATTATTGTTGATGCTCTGATCAAATTGGAGATCTAC
genomic: TCTCTCTAGGAGGTCCTCATGCTGGTACCGCTTCAGTGCCTCTTTGTGGTgtaagttaat ... atatatgcagTCTGGATTTTTTTGCATTATTGTTGATGCTCTGATCAAATTGGAGATCTAC
EST: gi|211357926|gb|FL387018.1|FL387018
EST:     TCTCTCTAGGAGGTCCTCATGCTGGTACCGCTTCAGTGCCTCTTTGTGGT                         TCTGGANNNNNNNGCATTATTGTTGATGCTCTGATCAAATTGGAGATCTAC
genomic: TCTCTCTAGGAGGTCCTCATGCTGGTACCGCTTCAGTGCCTCTTTGTGGTgtaagttaat ... atatatgcagTCTGGATTTTTTTGCATTATTGTTGATGCTCTGATCAAATTGGAGATCTAC
EST: gi|211458917|gb|FL402420.1|FL402420
EST:     TCTCTCTAGGAGGTCCTCATGCTGGTACCGCTTCAGTGCCTCTTTGTGGT                         TCTGGANNNNNNNGCATTATTGTTGATGCTCTGATCAAATTGGAGATCTAC
genomic: TCTCTCTAGGAGGTCCTCATGCTGGTACCGCTTCAGTGCCTCTTTGTGGTgtaagttaat ... atatatgcagTCTGGATTTTTTTGCATTATTGTTGATGCTCTGATCAAATTGGAGATCTAC
EST: gi|211319230|gb|FL384888.1|FL384888
EST:     TCTCTCTAGGAGGTCCTCATGCTGGTACCGCTTCAGTGCCTCTTTGTGGT                         TCTGGATTTTT
genomic: TCTCTCTAGGAGGTCCTCATGCTGGTACCGCTTCAGTGCCTCTTTGTGGTgtaagttaat ... atatatgcagTCTGGATTTTT
EST: gi|101397865|gb|EB820809.1|EB820809
EST:     TCTCTCTAGGAGGTCCTCATGCTGGGACCGCTTCAGTGCCTCTTTGTGGT                         TCTGGATTTTT
genomic: TCTCTCTAGGAGGTCCTCATGCTGGTACCGCTTCAGTGCCTCTTTGTGGTgtaagttaat ... atatatgcagTCTGGATTTTT
EST: gi|211298857|gb|FL392428.1|FL392428
EST:     TCTCTCTAGGAGGTCCTCATGCTGGTACCGCTTCAGTGCCTCTTTGTGGT                         TCTGGANNNNNNNGCATTATTGTTGATGCTCTGATCNAATTGGAGATCTAC
genomic: TCTCTCTAGGAGGTCCTCATGCTGGTACCGCTTCAGTGCCTCTTTGTGGTgtaagttaat ... atatatgcagTCTGGATTTTTTTGCATTATTGTTGATGCTCTGATCAAATTGGAGATCTAC
EST: gi|211533538|gb|FL409967.1|FL409967
EST:     TCTCTCTAGGAGGTCCTCATGCTGGTACCGCTTCAGTGCCTCTTTGTGGT                         TCTGGANNNNNNNGCATTATTGTTGATGCTCTGATCAAATTGGAGATCTAC
genomic: TCTCTCTAGGAGGTCCTCATGCTGGTACCGCTTCAGTGCCTCTTTGTGGTgtaagttaat ... atatatgcagTCTGGATTTTTTTGCATTATTGTTGATGCTCTGATCAAATTGGAGATCTAC
EST: gi|211487556|gb|FL382361.1|FL382361
EST:     TCTCTCTAGGAGGTCCTCATGCTGGTACCGCTTCAGTGCCTCTTTGTGGT                         TCTGGANNNNNNNGCATTATTGTTGATGCTCTGATCAAATTGGAGATCTAC
genomic: TCTCTCTAGGAGGTCCTCATGCTGGTACCGCTTCAGTGCCTCTTTGTGGTgtaagttaat ... atatatgcagTCTGGATTTTTTTGCATTATTGTTGATGCTCTGATCAAATTGGAGATCTAC
EST: gi|32868245|gb|CF007927.1|CF007927
EST:     TCTCTCTAGGAGGTCCTCATGCTGGTACCGCTTCAGTGCCTCTTTGTGGT                         TCTGGANNNNNNNGCATTATTGTTGATGCTCTGATCAAATTGGAGATCTAC
genomic: TCTCTCTAGGAGGTCCTCATGCTGGTACCGCTTCAGTGCCTCTTTGTGGTgtaagttaat ... atatatgcagTCTGGATTTTTTTGCATTATTGTTGATGCTCTGATCAAATTGGAGATCTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catattctatggcagcctgtatgattcagttgatatctgtatattatatatgcagTCTGGATTTTTTTGCATTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAGGTTTGAATGCATTGGCTTAAATCGAACTTGATTT
                           agttgat  putative branch site (score: 5)
                             ttgatatctgtatatt  TA-rich tract