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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgaatgcattggcttaaatcgaacttgatttttttgtcatggtaaacactttattatttttttttaaaaaaaaatcacgcgataacttgaggcatggtgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT

Basic information

species Zea mays
transcript GRMZM2G374779_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G374779_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os03g01150.1 (Oryza sativa), 3'ss of exon 8
gtttgaatgcattggcttaaatcgaacttgatttttttgtcatggtaaacactttattatttttttttaaaaaaaaatcacgcgataacttgaggcatggtgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
                                 ||  |||  |  |   ||||| |  ||  ||   |  |      |   |  |||| ||   | |||||||||| |||| |||||||||||||||||| ||| | ||||||||||||
--------------------------------gttcgtgtagtcatttgcacttgaaaatacttaggtggatttt--ttgtggaataatttattgaatggtgaattgcagGCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32854010|gb|CD993691.1|CD993691
EST:     TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAG                         GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
genomic: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAGgtttgaatgc ... tgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
EST: gi|32827255|gb|CD966933.1|CD966933
EST:     GATCTNACTCAGACCATGTGCAG                         GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
genomic: GATCT-ACTCAGACTATGTGCAGgtttgaatgc ... tgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
EST: gi|71763069|gb|DR961006.1|DR961006
EST:     TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAG                         GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
genomic: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAGgtttgaatgc ... tgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
EST: gi|33092681|gb|CF052675.1|CF052675
EST:     TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTANGT-CAG                         GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
genomic: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAGgtttgaatgc ... tgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
EST: gi|71311445|gb|DR792068.1|DR792068
EST:     TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAG                         GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
genomic: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAGgtttgaatgc ... tgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
EST: gi|24764991|gb|CA400152.1|CA400152
EST:     TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAG                         GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
genomic: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAGgtttgaatgc ... tgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
EST: gi|71331117|gb|DR802384.1|DR802384
EST:     TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAG                         GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
genomic: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAGgtttgaatgc ... tgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
EST: gi|17930445|gb|BM267405.1|BM267405
EST:     TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAG                         GAACATCTTGCACATAGTGGCTACCTCAAAATCCCAACT
genomic: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAGgtttgaatgc ... tgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
EST: gi|24768117|gb|CA403246.1|CA403246
EST:     TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAG                         GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
genomic: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAGgtttgaatgc ... tgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
EST: gi|32934679|gb|CF039491.1|CF039491
EST:     TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAG                         GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
genomic: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAGgtttgaatgc ... tgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
EST: gi|76925921|gb|DV170650.1|DV170650
EST:     TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAG                         GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
genomic: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAGgtttgaatgc ... tgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
EST: gi|78544411|gb|DV621909.1|DV621909
EST:     TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAG                         GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAAAT
genomic: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAGgtttgaatgc ... tgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
EST: gi|60353563|gb|DN220536.1|DN220536
EST:     TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAG                         GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
genomic: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAGgtttgaatgc ... tgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
EST: gi|32827355|gb|CD967033.1|CD967033
EST:     GATCTACTCAGACTATGTGCAG                         GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
genomic: GATCTACTCAGACTATGTGCAGgtttgaatgc ... tgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
EST: gi|74241744|gb|DT649658.1|DT649658
EST:     TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAG                         GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
genomic: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAGgtttgaatgc ... tgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
EST: gi|20802390|gb|BQ293440.1|BQ293440
EST:     TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAG                         GAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
genomic: TTATTGTTGATGCTCTGATCAAATTGGAGATCTACTCAGACTATGTGCAGgtttgaatgc ... tgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attatttttttttaaaaaaaaatcacgcgataacttgaggcatggtgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
                           cgataac  putative branch site (score: 3)
     ttttttttaaaaaaaa  TA-rich tract