1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgcacgatctcttctgttattgttattttctggttcttttattgccatgttgtattgaattgattttgacagcccttctcttaacttttagcttatattgtaatgcagGTAATCATAGGCTCACCTGAACTTAAAGCTAATCATTCCATACAACAAATTGTTGAAGTTATTTCAGATCATGAGAAGTATCCAAG
species | Zea mays |
transcript | GRMZM2G362850_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTAGAGAAGTTGAAGCCTTAGCAAGACAGTTTCTACAAAATCCTTACAAG GTAATCATAGGCTCACCTGAACTTAAAGCTAATCATTCCATACAACAAATTEST: gi|19058018|gb|BM736685.1|BM736685
genomic: CTAGAGAAGTTGAAGCCTTAGCAAGACAGTTTCTACAAAATCCTTACAAGgtgcacgatc ... tgtaatgcagGTAATCATAGGCTCACCTGAACTTAAAGCTAATCATTCCATACAACAAATT
EST: AGACAGTTTCTACAAAATCCTTACAAG GTAATCATAGGCTCACCTGAACTTAAAGCTAATCATTCCATACAACAAATTEST: gi|19350987|gb|BM895519.1|BM895519
genomic: AGACAGTTTCTACAAAATCCTTACAAGgtgcacgatc ... tgtaatgcagGTAATCATAGGCTCACCTGAACTTAAAGCTAATCATTCCATACAACAAATT
EST: GAAGCCTTAGCAAGACAG-TTCTACAAAATCCTTACAAG GTAATCATAGGCTCACCTGAACTTAAAGCTAATCATTCCATACAACAAATTEST: gi|19350988|gb|BM895520.1|BM895520
genomic: GAAGCCTTAGCAAGACAGTTTCTACAAAATCCTTACAAGgtgcacgatc ... tgtaatgcagGTAATCATAGGCTCACCTGAACTTAAAGCTAATCATTCCATACAACAAATT
EST: CTAGAGAAGTTGAAGCCTTAGCAAGACAGTTTCTACAAAATCCTTACAAG GTAATCATAGGCTCACCTGAACTTAAAGCTAATCATTCCATACAACAAATTEST: gi|87152035|gb|DY396824.1|DY396824
genomic: CTAGAGAAGTTGAAGCCTTAGCAAGACAGTTTCTACAAAATCCTTACAAGgtgcacgatc ... tgtaatgcagGTAATCATAGGCTCACCTGAACTTAAAGCTAATCATTCCATACAACAAATT
EST: CTAGAGAAGTTGAAGCCTTAGCAAGACAGTTTCTACAAAATCCTTACAAG GTAATCATAGGCTCACCTGAACTTAAAGCTAATCATTCCATACAACAAATTEST: gi|18965091|gb|BM661386.1|BM661386
genomic: CTAGAGAAGTTGAAGCCTTAGCAAGACAGTTTCTACAAAATCCTTACAAGgtgcacgatc ... tgtaatgcagGTAATCATAGGCTCACCTGAACTTAAAGCTAATCATTCCATACAACAAATT
EST: TAGAGAAG-TGAAGCCTTAGCAAGNACAGTTTCTACAAAATCCTTACAAG GTAATCATAGGCTCACCTGAACTTAAAGCTAATCATTCCATACAACAAATTEST: gi|32804797|gb|CD957033.1|CD957033
genomic: TAGAGAAGTTGAAGCCTTAGCAAG-ACAGTTTCTACAAAATCCTTACAAGgtgcacgatc ... tgtaatgcagGTAATCATAGGCTCACCTGAACTTAAAGCTAATCATTCCATACAACAAATT
EST: CTAGAGAAGTTGAAGCCTTAGCAAGACAGTTTCTACAAAATCCTTACAAG GTAATCATAGGCTCACCTGAACTTAEST: gi|116817908|gb|EC860818.1|EC860818
genomic: CTAGAGAAGTTGAAGCCTTAGCAAGACAGTTTCTACAAAATCCTTACAAGgtgcacgatc ... tgtaatgcagGTAATCATAGGCTCACCTGAACTTA
EST: CTAGAGAAGTTGAAGCCTTAGCAAGACAGTTTCTACAAAATCCTTACAAG GTAATCATAGGCTCACCTGAACTTAAAGCTAATCATTCCATACAACAAATT
genomic: CTAGAGAAGTTGAAGCCTTAGCAAGACAGTTTCTACAAAATCCTTACAAGgtgcacgatc ... tgtaatgcagGTAATCATAGGCTCACCTGAACTTAAAGCTAATCATTCCATACAACAAATT
attgaattgattttgacagcccttctcttaacttttagcttatattgtaatgcagGTAATCATAGGCTCACCTGAACTTAAAGCTAATCATTCCATACAACAAATTGTTGAAGTTATTTCAGATCATGAGAAGTATCCAAG
tcttaac putative branch site (score: 2)
ttttagcttatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcacgatctcttctgttattgttattttctggttcttttattgccatgttgtattgaattgattttgacagcccttctcttaacttttagcttatattgtaatgcagGTAATCATAGGCTCACCTGAACTTAAAGCTAATCATTCCATACAACAAATTGTTGAAGTTATTTCAGATCATGAGAAGTATCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT