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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgttataccatcttctaatatactgcaactacgttttctgcattttgatcatatactgtatgcgcatggttagttctgacctgactcgctgattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGCAGCATGATGAGGCAGTCCTCATTACATGGTATGATAGCCAGGAAAAATA

Basic information

species Zea mays
transcript GRMZM2G361693_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G361693_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g50620.1 (Oryza sativa), 3'ss of exon 7
-tgttataccatc-ttctaatatactgcaactacgttttctgcattttgatcatatactgtatgcgcatgg-ttagttctgacctgactcgctgattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGCAGCATGATGA-GGCAG------TCCTCATTACATGGTATGATAGCCAGGAAAAATA
 ||       ||  || |||     |   | |   ||  |  ||  |  ||  |  || || ||   |||    | |||| |||  ||    ||||| |||||||||||||| |||||||||||||  |||||||| ||||||| |||| || || |  || || ||| |      | ||  | | ||| |||||||||| ||       
atgagcctgtatggttttaaccaggtctcattgaattgacctcagctgcattttgaac-gtttgaagatgaaccatttctaaccgaacct--tgattttgcagTCATTTGGGGCAGACAGGAAGGAATTGAGAGCTACTCTTCCATAGGCTGACAACGAGAAGATGGCGGCATTATTTCTTCTAATATGATATGATAGCCTGG-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78075088|gb|DV503522.1|DV503522
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGCCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|33096109|gb|CF056103.1|CF056103
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|76285908|gb|DV025476.1|DV025476
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTTTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|71430300|gb|DR811350.1|DR811350
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|91867561|gb|EB399727.1|EB399727
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|76925282|gb|DV170361.1|DV170361
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|50330864|gb|CO525990.1|CO525990
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|60399155|gb|DN231969.1|DN231969
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|149101857|gb|EE187940.2|EE187940
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|86471503|gb|DY237873.1|DY237873
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|5670884|gb|AI932147.1|AI932147
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|60348121|gb|DN215094.1|DN215094
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|40336728|gb|CK370798.1|CK370798
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|67014771|gb|CO443520.1|CO443520
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|6993969|gb|AW453183.1|AW453183
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|89763316|gb|DY690567.1|DY690567
EST:     ATACTTTTGAACTCTTCCCAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTTTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|76021451|gb|DT948621.1|DT948621
EST:     ATACTTTTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGGGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|5847216|gb|AW000295.1|AW000295
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|74233521|gb|DT641435.1|DT641435
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|50332698|gb|CO527824.1|CO527824
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|71770429|gb|DR968366.1|DR968366
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|37395082|gb|CF634820.1|CF634820
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|50335332|gb|CO530458.1|CO530458
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|71432517|gb|DR813567.1|DR813567
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|5847105|gb|AW000184.1|AW000184
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|5108256|gb|AI739969.1|AI739969
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|50339732|gb|CO534858.1|CO534858
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|71756697|gb|DR954634.1|DR954634
EST:     ATACTTTTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCNNNNNNNCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|17921802|gb|BM259453.1|BM259453
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|6020670|gb|AW065703.1|AW065703
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|31356997|gb|CD441354.1|CD441354
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|50339733|gb|CO534859.1|CO534859
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|166508545|gb|EG147363.1|EG147363
EST:     GTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: GTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|31362510|gb|CD446867.1|CD446867
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|31356922|gb|CD441279.1|CD441279
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|19057554|gb|BM736236.1|BM736236
EST:     ACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGAAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|111193578|gb|EE291714.1|EE291714
EST:     ATACTTTTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTTTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|78092533|gb|DV520907.1|DV520907
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|17921476|gb|BM259127.1|BM259127
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|24768276|gb|CA403405.1|CA403405
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|74235161|gb|DT643075.1|DT643075
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|71419909|gb|DR804937.1|DR804937
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|31361786|gb|CD446143.1|CD446143
EST:     ATACTTCTGATCTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|89252578|gb|DY624364.1|DY624364
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|78123323|gb|DV541707.1|DV541707
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|71323252|gb|DR798280.1|DR798280
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTTTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|211364496|gb|FL432826.1|FL432826
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|71312003|gb|DR792517.1|DR792517
EST:     ATACTTTTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|84351245|gb|DW245650.1|DW245650
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|88748419|gb|DY532560.1|DY532560
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|33467100|gb|CF244149.1|CF244149
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGCCAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|149005248|gb|EE039795.2|EE039795
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGCCCAGACAGGAAGGAGATGAGAGCTTTTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|22490952|gb|BU050875.1|BU050875
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|76018760|gb|DT945930.1|DT945930
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|50322896|gb|CO518022.1|CO518022
EST:     ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|78076521|gb|DV504955.1|DV504955
EST:     ATACTTTTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTTTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC
EST: gi|94474454|gb|EB703412.1|EB703412
EST:     ATACTTTTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAG                         TCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTTTCTTCCGTAGGTTGGC
genomic: ATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 202

GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGCAGCATGATGAGGCAGTCCTCATTACATGGTATGATAGCCAGGAAAAATA


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 189

GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGCAGCATGATGAGGCAGTCCTCATTACATGGTATGATAGCCAGGAAAAATA


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 267

GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGCAGCATGATGAGGCAGTCCTCATTACATGGTATGATAGCCAGGAAAAATA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 433

GAAAGTTCTATGCCTGATACTTCTGAACTCTTCACAAATGTTTATAAGAAGGGCTTCGGCGTGGAGgtaagttgtc ... gattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGCAGCATGATGAGGCAGTCCTCATTACATGGTATGATAGCCAGGAAAAATA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatcatatactgtatgcgcatggttagttctgacctgactcgctgattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGCAGCATGATGAGGCAGTCCTCATTACATGGTATGATAGCCAGGAAAAATA
     atatact  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgttataccatcttctaatatactgcaactacgttttctgcattttgatcatatactgtatgcgcatggttagttctgacctgactcgctgattgtgcagTCATTTGGGCCAGACAGGAAGGAGATGAGAGCTTCTCTTCCGTAGGTTGGCAGCATGATGAGGCAGTCCTCATTACATGGTATGATAGCCAGGAAAAATA

- - - - - - - - - - - ctgcaac
- - - - - - - - - - - - - - - - - - -ctgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacctg