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...gtttcatgcaagttatatatttgcactcttgttcagttcatgaatgttttttattcagaagactagtaatttgttgatttactttataaattttatttagGTTGAGCCATCGAAAAGGAAAATTAAGAAAACTTCTGTTCCGATCCATGAGTTGGTCTACGGCGCATTGTCTGCCACTGACCTGCAGAAGGCTGTAGAGA
species | Zea mays |
transcript | GRMZM2G361605_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAGCACAAGATTCTGAGGAAAAATCTGTTCCAATGGAAACTGATGCAAAG GTTGAGCCATCGAAAAGGAAAATTAAGAAAACTTCTGTTCCGATCCATGAGEST: gi|211418421|gb|FL279572.1|FL279572
genomic: GAGCACAAGATTCTGAGGAAAAATCTGTTCCAATGGAAACTGATGCAAAGgtgtgatata ... ttttatttagGTTGAGCCATCGAAAAGGAAAATTAAGAAAACTTCTGTTCCGATCCATGAG
EST: AAGCACAAGATTCTGAGGAAAAATCTGTTCCAATGGAAACTGATGCAAAG GTTGAGCCATCGAAAAGGAAAATTAAGAAAACTTCTATTCCGATCCATGAG
genomic: GAGCACAAGATTCTGAGGAAAAATCTGTTCCAATGGAAACTGATGCAAAGgtgtgatata ... ttttatttagGTTGAGCCATCGAAAAGGAAAATTAAGAAAACTTCTGTTCCGATCCATGAG
gttttttattcagaagactagtaatttgttgatttactttataaattttatttagGTTGAGCCATCGAAAAGGAAAATTAAGAAAACTTCTGTTCCGATCCATGAGTTGGTCTACGGCGCATTGTCTGCCACTGACCTGCAGAAGGCTGTAGAGA
tgttgat putative branch site (score: 4)
ttttattt putative PPT
actagtaatttgttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttcatgcaagttatatatttgcactcttgttcagttcatgaatgttttttattcagaagactagtaatttgttgatttactttataaattttatttagGTTGAGCCATCGAAAAGGAAAATTAAGAAAACTTCTGTTCCGATCCATGAGTTGGTCTACGGCGCATTGTCTGCCACTGACCTGCAGAAGGCTGTAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- ttcatgc
- - - - - - - - - - -tgcactc
- - - - - - - - - - - - - - - - - - - -atgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgat